The largest database of trusted experimental protocols

Sybr exscript qrt pcr kit

Manufactured by Takara Bio
Sourced in China, Germany, United States

The SYBR ExScript qRT-PCR Kit is a reagent system designed for quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis. It includes a reverse transcriptase enzyme and SYBR Green-based detection for measuring gene expression levels.

Automatically generated - may contain errors

23 protocols using sybr exscript qrt pcr kit

1

qRT-PCR Quantification of Kidney mRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA of kidney tissues was isolated with RNAex pro reagent (Accurate Biotechnology, Hunan), and 1 mg RNA of each sample was reversely transcribed into cDNA for detection of mRNA expression. Then, qRT-PCR was performed in a CFX96 Touch Real-Time PCR System (Bio-Rad, Hercules, CA, United States) using a SYBR ExScript qRT-PCR Kit (TaKaRa Bio) with the following conditions: at 95°C for 1 min followed by 40 cycles at 95°C for 15 s, 60°C for 15 s, and 72°C for 45 s. Primer sequences used in the experiment are shown in Table 1. β-Actin was considered as a reference gene to normalize mRNA quantity, and the 2−ΔΔCT method was used for the calculation of relative mRNA expression.
+ Open protocol
+ Expand
2

Quantitative Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from the burn tissues and HDF cells was extracted using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.) and purified with RNase-free Dnase I (Promega Corporation, Madison, WI, USA). The purified RNA was then used for cDNA synthesis. The expression of certain genes in the burn tissues or HDF cells was detected using a SYBR ExScript qRT-PCR kit (Takara Biotechnology Co., Ltd, Dalian, China) on an ABI 7500 system (Applied Biosystems; Thermo Fisher Scientific, Inc.). Primer sequences are listed in Table I. The LET primers were synthesized by Shanghai Sangon Biological Engineering Technology and Services Co., Ltd. (Shanghai, China). A final 20-µl reaction mixture was amplified using the following reaction conditions: Initial desaturation at 95°C for 5 min, followed by denaturation at 95°C for 30 sec, annealing at 60°C for 40 sec and extension at 72°C for 10 sec for 40 cycles. GAPDH was used as an internal control for mRNA or lncRNAs. All reactions were run in triplicate. PCR products were resolved on 2% agarose, visualized with ethidium bromide staining, and analyzed using a FluorChem 8900 imager (ProteinSimple, San Jose, CA, USA). The relative mRNA expression level was calculated by the 2−ΔΔCq method (27 (link)).
+ Open protocol
+ Expand
3

qRT-PCR Analysis of ZEB2 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cells or tissues by TRIzol reagent (Thermo Fisher Scientific, Inc.). The quality and concentration of RNA was measured by NanoDrop (Thermo Fisher Scientific, Inc.). RNA samples were reverse transcribed using cDNA synthesis kit (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocols. qPCR was then performed using the SYBR ExScript qRT-PCR kit (Takara Biotechnology Co., Ltd., Dalian, China) and conducted on an Applied Biosystems 7500 Real-Time PCR system (Thermo Fisher Scientific, Inc.). Conditions of the PCR amplification were: 94°C (5 min), then 30 cycles at 94°C (30 sec), 60°C (45 sec) and 72 C (45 sec) with a final extension at 72 C for 10 min.
The primer pairs used in qPCR were as follows: ZEB2 forward, 5′-AAGGAGCAGGTAATCGCAAG-3′, and reverse, 5′-GGAACCAGAATGGGAGAAACG-3′; GAPDH forward, 5′-AGAAGGCTGGGGCTCATTTG-3′ and reverse, 5′-AGGGGCCATCCACAGTCTTC-3′. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as the endogenous control. The expression fold changes were calculated using the 2−ΔΔCq method (14 (link)).
+ Open protocol
+ Expand
4

miRNA-223 Expression Analysis in Cultured Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cultured cells with TRIzol reagent (Invitrogen) based on the manufacturer’s instructions. The concentration and purity of total RNA were determined using SMA 400 UV0VIS (Merinton, Shanghai, China). Purified RNA (0.5 μg/μl) was used for cDNA synthesis using the PrimeScript™ RT Master Mix Kit (RR036A; Takara, Kyoto, Japan). qRT-PCR was then carried out in an Eppendorf Mastercycler (Brinkman Instruments, Westbury, NY) using the SYBR ExScript qRT-PCR Kit (Takara, China) following the manufacturer’s recommended protocol. At the end of each PCR, melting curve analysis was performed to confirm that only one product was amplified and detected. The U6 small nuclear RNA (RNU6) was used as an internal control for miRNA. Primers used for amplification in our study are as follows: miR-223, 5′-GTGCAGGGTCCGAGGT-3′ (sense) and 5′-CGGGCTGTCAGTTTGTCA-3′ (antisense); RNU6, 5′-CTCGCTTCGGCAGCACA-3′ (sense) and 5′-AACGCTTCACGAATTTGCGT-3′ (antisense). The relative gene expression levels were calculated with the comparative threshold (Ct) cycle (2−ΔΔCt) method. Each reaction was performed in triplicate.
+ Open protocol
+ Expand
5

Quantification of Appetite-Related Gene Expression in Hepatopancreas

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine the expression level of the nutrition metabolism-regulation-related genes in hepatopancreas, four appetite-related genes were detected (Table S3). In detail, RNA extraction and cDNA synthesis were performed as described in a previous study [34 (link)]. qRT-PCR was carried out in an ABI 7300 Real-time Detection System (Applied Biosystems, Foster City, CA, USA) using the SYBR ExScript qRT-PCR Kit (Takara, Dalian, China) with β-actin as an internal reference [35 (link)]. The assay was conducted in three replicates, and the data were analyzed by the 2−ΔΔCt method [36 (link)].
+ Open protocol
+ Expand
6

Immune Gene Expression in Tongue Sole

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tongue sole as described above were randomly divided into three groups and administered via intraperitoneal injection with 50 µl PBS containing 6.25 µM NKLP27 or P86P15. The control group was injected with 50 µl PBS. At 1 h, 12 h, and 24 h post-injection, tissues were collected and used for total RNA extraction with the RNAprep Tissue Kit (Tiangen, Beijing, China). One microgram of RNA was used for cDNA synthesis with the Superscript II reverse transcriptase (Invitrogen, Carlsbad, USA). The expression levels of interleukin (IL)-1β, IL-8, CsCCK1, CsCXCe1, toll-like receptor 9 (TLR9), myeloid differentiation factor 88 (Myd88), CsISG15, and CsG3BP were determined by qRT-PCR with primers reported previously [9] (link), [38] (link)–[40] (link). qRT-PCR was carried out in an Eppendorf Mastercycler (Eppendorf, Hamburg, Germany) using the SYBR ExScript qRT-PCR Kit (Takara, Dalian, China) as described previously [41] (link). Melting curve analysis of amplification products was performed at the end of each PCR to confirm that only one PCR product was amplified and detected. The expression levels of the immune genes were analyzed using comparative threshold cycle method with beta-actin as the control.
+ Open protocol
+ Expand
7

Quantitative RT-PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cells or tissues with the RNAprep Tissue Kit (Tiangen, Beijing, China). One microgram of total RNA was used for cDNA synthesis with M-MLV reverse transcriptase (Invitrogen, Carlsbad, CA, USA). qRT-PCR was carried out in an Eppendorf Mastercycler (Eppendorf, Hamburg, Germany) using the SYBR ExScript qRT-PCR Kit (Takara, Dalian, China) as described previously [28] (link). Melting curve analysis of amplification products was performed at the end of each PCR to confirm that only one PCR product was amplified and detected. The expression level of the target gene was analyzed using comparative threshold cycle method with beta-actin (for samples without viral infection) or elongation factor-1-alpha (EF1 alpha) (for samples from virus-infected fish) as the internal reference [28] (link), [29] (link). All data are given in terms of mRNA levels relative to that of the internal reference and expressed as means plus or minus standard errors of the means (SE).
+ Open protocol
+ Expand
8

Quantitative Analysis of Antioxidant Genes in Wheat

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from different treatment of the wheat seedlings leaves (0.2 g) by using PureLink®RNA Mini Kit (Tiangen Biotechnology, Beijing, China). The quality of total RNA was quantified by the UV spectrophotometer. First-strand cDNA was synthesized by Revert Aid TM First Strand cDNA Synthesis Kit (Tiangen Biotechnology, Beijing, China). The qRT-PCR was performed in a 20 μl reaction volume tube using the SYBR ExScript qRT-PCR Kit (Takara, Dalian, China) according to the method described previously by Li et al. (2013) (link) and Qiu et al. (2013) (link). Specific primers for SOD, POD, and CAT genes, and the internal control tubulin gene were used to amplify amplicons specific for wheat seedlings. Specific primers were designed according to wheat EST sequences of candidate proteins available in NCBI (Qiu et al., 2014 (link); Zou et al., 2015 (link)), and the DNA sequences of specific primers are provided in Table 1. Melting curve analysis of amplification products was performed at the end of each PCR to confirm that only one PCR product was amplified and detected. Gene expression was counted and expressed relative to the expression levels of an internal reference gene actin in each sample using the 2-ΔΔCt method (Livak and Schmittgen, 2001 (link)).
+ Open protocol
+ Expand
9

Quantifying Gene Expression in Psoriatic Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from psoriatic HaCaT cells using TRIzol Reagent (Invitrogen) at 24 h after stimulation or transfection. The RNA was reversely transcribed to cDNA using a PrimeScript RT-polymerase kit (TaKaRa, Dalian, China) to the manufacturer’s protocol.
The expression levels of genes were detected using an SYBR ExScript qRT-PCR Kit (TaKaRa). GAPDH was used as the internal control. Gene-specific PCR primer pairs were synthesized by Sangon (Shanghai, China; Table 1). PCR amplification was conducted according to the following reaction conditions: 95 °C for 5 min; 38 cycles of 95 °C for 30 s, 60 °C for 40 s, and 72 °C for 45 s. The relative expression levels of genes were analyzed using the 2-△△Ct methods.
+ Open protocol
+ Expand
10

Quantitative Analysis of miR-30c Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from different transfected cells using RNA Iso-plus reagent (Takara Bio, China) and then reverse transcribed into cDNA using PrimeScript RT Reagent Kit (Invitrogen) following the manufacturer's protocol. The primers in this study were designed using Primer 5.0 (Primer-E, Ltd., United Kingdom) as follows: miR-30c RT: 5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGCTGAG-3′; U6 RT 5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTGGAAC-3′. With a standard protocol provided by the manufacturer, qRT-PCR was performed in the ABI PRISM 7300 Fast Real-Time PCR System (Ambion, USA) using the SYBR ExScript qRT-PCR Kit (Takara, China), under the following conditions: 95°C for 5 min, 95°C for 10 s, and 40 cycles at 60°C for 30 s. Each reaction was performed in triplicate. The expression levels of miR-30c were normalized to U6. The results of RT-PCR are reported as 2-ΔΔCt.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!