Targeted LC-MS analysis Immuno-enriched proteotypic, surrogate peptides were resolved, separated and analysed using an ACQUITY ultra performance liquid chromatography (UPLC) I-Class PLUS system coupled to a
Xevo TQ-XS Tandem Quadrupole mass spectrometer (Waters Corporation, Manchester, UK), equipped with a Z-spray electrospray ionisation (ESI) source set to positive mode. An ACQUITY UPLC Peptide BEH C18 1.7 µm, 2.1 mm × 50 mm column was fitted to the LC system.
Peptide eluates were analysed as 10 µL injections and chromatographic separation was performed at a constant flow rate of 0.6 mL/min with water/0.1 % formic acid (A) and acetonitrile/0.1 % formic acid (B) mobile phases. A 3.5 min gradient was used: 95 % mobile phase A initial to 0.25 min, to 60 % A at 2.2 min, to 5 % A at 2.3 min until 2.8 min and to 95 % A at 3.15 min. Column temperature was set to 40 °C. For the source parameters; capillary voltage (0.6 kV), desolvation temperature (650 °C), desolvation flow (1000 L/h) and cone flow (150 L/h) were set accordingly. Simultaneous multiple reaction monitoring (MRM) of SARS-CoV-2 peptides AYN, DGI, and ADE and their stable isotope labelled analogues, was performed (Supplementary Table I).
Lane D., Allsopp R., Holmes C.W., Slingsby O.C., Jukes-Jones R., Bird P., Anderson N.L., Razavi M., Yip R., Pearson T.W., Pope M., Khunti K., Doykov I., Hällqvist J., Mills K., Skipp P., Carling R., Ng L., Shaw J., Gupta P, & Jones D.J.L. (2024). A high throughput immuno-affinity mass spectrometry method for detection and quantitation of SARS-CoV-2 nucleoprotein in human saliva and its comparison with RT-PCR, RT-LAMP, and lateral flow rapid antigen test. Clinical chemistry and laboratory medicine, 62(6).