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K acetrm

Manufactured by Megazyme
Sourced in Ireland

K-ACETRM is a laboratory test kit used for the determination of acetate in various sample types. The kit includes reagents and consumables necessary to perform the analysis.

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8 protocols using k acetrm

1

Enzymatic Hydrolysis of Acetylated Glucuronoxylan

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FjoAcXE, CjGlcA67A, AxyAgu115A, and E-AXEAO were tested alone and as pairs of carbohydrate esterase and α-glucuronidase activities. Reactions comprised 1% (w/v) Ac-XOS in 50 mM HEPES (pH 7.0), which is within one pH unit from the optimum pH of each enzyme. Reactions were initiated by adding 0.5 µg of each enzyme; the final reaction volume was 30 µL. Reactions continued for 20 min at 30 °C and were stopped by boiling for 10 min. The samples were quickly centrifuged and release of acetic acid and d-glucuronic acid were measured using Acetic Acid (K-ACETRM, Megazyme) and d-glucuronic acid/d-galacturonic acid (K-URONIC, Megazyme) assay kits, respectively. Reaction mixtures without enzymes were used as blanks.
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2

Acetylated Xylo-oligosaccharide Deacetylation

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The activities of studied AcXEs on acetylated xylooligosaccharides were tested using highly branched acetylated and feruloylated CF-XOS (described in Appeldoorn et al., 2013 [30 (link)]) and a per-acetylated xylo-oligosaccharide mixture (DP 4–7). Acetic acid release was determined using the acetic acid kit (K-ACETRM, Megazyme). Reactions (50 µL final volume) containing CF-XOS comprised 1 µg enzyme, and 50 mM HEPES buffer (pH 7.0) and 0.5 µg of CF-XOS, and were incubated at 30 °C for 20 min and 4 h. Reactions (60 µL final volume) containing the per-acetylated xylo-oligosaccharide mixture comprised 2 µg enzyme, 50 mM HEPES buffer (pH 7.0) and 0.5 µg of per-acetylated xylo-oligosaccharide mixture, and were incubated at 30 °C for 20 min, 4 h and 20 h. The maximal acetic acid release from each substrate was determined using a modified method described by Teleman et al., 2002 [4 (link)]. Briefly, 1% (w/v) substrate was suspended in 50 µL 0.5 M NaOH for 30 min at 70 °C and 450 rpm. The reaction solutions were then neutralized, and the release of acetic acid was measured with acetic acid kit. Control reactions without enzyme were run in parallel and the amount of non-enzymatically released acetic acid was subtracted from the values of enzyme–substrate reaction mixtures.
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3

Automated Metabolic Profiling of Blood Plasma

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The blood plasma samples were analyzed through an animal diagnostic service (Animal Health Laboratory, University of Guelph, Guelph, Canada). Briefly, an automated analyzer (Cobas® c311/501 analyzer, Roche Diagnostics GmbH, Indianapolis, USA) [26 (link)] was used to measure the following blood plasma metabolic parameters: albumin (g/l), aspartate aminotransferase (AST; U/l), γ-glutamyl transpeptidase (GGT; U/l), urea (mmol/l), cholesterol (mmol/l), creatinine (mmol/l), alkaline phosphatase (ALP; U/l), creatine kinase (U/l) and lipase (U/l). Carbon dioxide (CO2; mmol/l) levels were determined using an automated analyzer (Cobas® 4000 c311, Roche Diagnostics GmbH, Mannheim, Germany). The determination of β-hydroxybutyrate (µmol/l) was completed using a commercial kit (Randox®, RANDOX Laboratories Ltd., Crumlin, UK). Blood plasma acetate (g/l) was determined via spectrophotometry using a commercial kit (K-ACETRM, Megazyme© International, Wicklow, Ireland) according to the manufacturers’ protocol. A colorimetric-based assay was used to determine the concentration of total bile acids (BA; µmol/l) (Diazyme total bile acids, Diazyme©, Poway, USA).
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4

Comprehensive Lignocellulose Analysis Protocol

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Wet chemistry-based analysis of lignocellulose was conducted as previously described with minor adaptations [57 (link)]. In brief, alcohol insoluble residues (AIR) were prepared from the different materials and used for all further analysis. Lignin was determined as acetyl bromide soluble lignin (ABSL) and crystalline cellulose content by Updegraff method both according to Foster et al. [58 , 59 ]. Monosaccharide composition of the matrix polysaccharides in the AIR was determined after TFA hydrolysis by high-performance anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD) as described in Damm et al. [57 (link)]. The total acetate content was determined using an acetic acid kit (catalog #K-ACETRM, Megazyme, Wicklow, Ireland), as previously described [31 (link)].
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5

Quantifying Acetic and Ferulic Acid Release

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Release of acetic acid was quantified for samples containing 5% corn cob using the acetic acid (rapid manual format) assay kit K-ACETRM (Megazyme) according to the supplier’s instructions. Release of ferulic acid was determined using UHPLC-HRMS on a 1290 Infinity II LC system with an Acquity UPLC HSS T3 column coupled to a 6550i funnel QTOF. A methanol gradient was used for separation and the QTOF was calibrated on a mass range of 100 to 3200 m/z. The monoisotopic mass and the expected ions of the compound were calculated based on the given molecular formula: C10H10O4.
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6

Quantitative Analysis of Microbial Growth and Metabolites

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Cell growth was monitored by measuring OD600 using a UV–vis spectrophotometer. Dry cell weight was used for biomass calculation. Cells were centrifugated at 12,000g and washed by deionized water for three times. The obtained cells were dried at 70 °C to constant cell weight (dry cell weight). It was measured that OD600 of 1.0 makes the equivalent of dry cell weight of 0.2 g/L. Extracellular pH was measured manually by pH meter (catalog no. B-712, Horiba). Acetate level in extracellular supernatant was directly analyzed by enzymatic assays (catalog no. K-ACETRM, Megazyme). Fluorescence of the constructed strains (GS-gfp, GS-PMA1-gfp and GS-ScFPS1*-gfp) was observed by inverted microscope DMI3000B (Leica) using a 100× oil immersion objective. Images were processed using Leica application suite (version 2.8.1).
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7

Quantification of Ethanol and Acetic Acid

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Quantification of ethanol and Acetic Acid was performed in 96-well format following indicated microplate assay procedure. In order to quantify ethanol content, samples were diluted 1:200 in water and determined using the Ethanol Assay Kit K-ETOH® from Megazyme. In order to quantify Acetic Acid content, samples were diluted 1:100 in water and determined using Acetic Acid (Acetate Kinase Manual Format) K-ACETRM® from Megazyme. Both kits are based on stoichiometric reactions using NADH as a cofactor and measurements in the decrease/increase of absorbance at 340 nm (Megazyme®). A calibration curve of known concentrations was performed for the accurate determination of each compound. Optical density was measured in a Spark®Multimode Plate Reader (TECAN).
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8

Quantification of Acetic Acid in Bacterial Cultures

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Acetic acid was quantified by the enzymatic kit K-ACETRM (Megazyme). One milliliter aliquots of the stationary phase bacterial cultures were treated: cells were removed by centrifugation (4000 ×g, 15 min, 4°C) and the supernatants were treated according to the kit instructions. The assay is based on enzymatic reactions leading to the production of NAD + which is stoichiometric to the amount of acetic acid present in the sample. NADH consumption is measured by evaluating the absorbance decrease at 340 nm. For all the strains three biological and two technical replicates were performed.
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