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50 protocols using f 2000

1

In vivo Gastrointestinal Motility Assessment

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In vivo gastrointestinal motility was assessed by administering the mice with 70 µl of fluorescein-isothiocyanate dextran (70.000 MW; MP Biomedicals LLC, DBA Italia, Segrate, Italy). Dextran was dissolved in PBS (6.25 mg/mL) and administered to mice via oral gavage with minimum animal handling. In line with our set up experiments (Brun et al., 2013 (link)), the fluorescent probe in faecal samples was evaluated in animals sacrificed 60 min after probe administration. The stomach, caecum, and colon were examined separately. The small intestine was cut into 8 identical segments. The luminal contents of each segment were collected and centrifuged (10,000 xg, 15 min, 4°C). Fluorescence analysis was performed at 494/521 nm (Hitachi-F2000). Gastric emptying was quantified by measuring the percentage of the fluorescent probe that emptied the stomach. The gastrointestinal transit was evaluated by calculating the geometric centre (GC) of distribution of the fluorescent probe.
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Intracellular Calcium Measurement Protocol

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We measured intracellular calcium levels using fura-2, a fluorescent probe, as described previously [18 (link)]. Changes in fluorescence were recorded using a fluorescence spectrofluorometer (F-2000; Hitachi, Tokyo, Japan). The intracellular calcium [Ca2+] i values were estimated according to our previous report [18 (link)]. Background autofluorescence obtained from untreated cells was subtracted from all measurements. Additionally, inhibitor effectiveness was assessed after a 30-min pretreatment.
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Intestinal Permeability Assessment in Mice

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An intestinal permeability assay was performed as described previously (14 (link)). Briefly, mice were water-starved for 3.5 h and then gavaged with FITC- dextran 4,000 (FD-4) (Sigma-Aldrich) in PBS at a concentration of 600 mg/kg body weight. Blood samples were collected after 3.5 h and diluted 1/100 in PBS to measure the fluorescence intensity using a fluorospectrophotometer (Hitachi F-2000, Tokyo, Japan) with an excitation wavelength of 480 nm and an emission wavelength of 520 nm. The concentration of FITC-dextran in serum samples was calculated using a known standard of serially diluted FITC-dextran. Serum samples of mice that did not receive any FITC-dextran were used to determine the background.
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Intestinal Permeability Assessment in Mice

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An intestinal permeability assay was performed as described previously (14 (link)). Briefly, mice were water-starved for 3.5 h and then gavaged with FITC- dextran 4,000 (FD-4) (Sigma-Aldrich) in PBS at a concentration of 600 mg/kg body weight. Blood samples were collected after 3.5 h and diluted 1/100 in PBS to measure the fluorescence intensity using a fluorospectrophotometer (Hitachi F-2000, Tokyo, Japan) with an excitation wavelength of 480 nm and an emission wavelength of 520 nm. The concentration of FITC-dextran in serum samples was calculated using a known standard of serially diluted FITC-dextran. Serum samples of mice that did not receive any FITC-dextran were used to determine the background.
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5

Measuring Intracellular Calcium Levels

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We measured the intracellular calcium levels using fura-2, a fluorescent probe, as described previously44 (link). Changes in fluorescence were recorded using a fluorescence spectrofluorometer (F-2000; Hitachi, Tokyo, Japan). The [Ca2+]i values were estimated according to our previous report44 (link). Background autofluorescence obtained from the unloaded cells was subtracted from all measurements. Additionally, the inhibitor effectiveness was compared after a 30-min pretreatment.
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Measuring Intestinal Transit in Mice

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Measurement of intestinal transit was performed as a terminal experiment. Mice were fasted for 16 h with water available ad libitum. At 30 minutes prior to euthanasia, 0.1 ml of 0.5 mmol/L 70 kDa fluorescein isothiocyanate (FITC)–dextran (Sigma-Aldrich, St. Louis, MO) was administered by oral gavage [26] (link), [27] (link). After 30 minutes, mice were euthanized and the entire gastrointestinal tract, from stomach to anus, was removed. The small intestines were cut into 8 segments of equal length from the stomach to the cecum. The stomach and each segment were flushed with 3 ml of 50 mmol/l Tris buffered saline, the effluent was collected and centrifuged at 1200 rpm for 5 minutes to pellet any suspended debris. Fluorescent intensity in each sample was measured using a fluorescence spectrophotometer (emission wavelength  = 518 nm; excitation wavelength  = 492 nm; F-2000, Hitachi, Inc., Japan). Intestinal geometric center (IGC) was calculated as: (fraction of amount of FITC in each segment) × (segment number). The dextran concentration in each segment was expressed as a fraction of total dextran recovery.
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7

Measuring Intracellular Calcium Dynamics

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The changes in the intracellular calcium concentration were detected using the fluorescent probe fura-2 [14 (link)]. NISCH-CHO-K1 cells were placed in a buffered physiological saline solution (PSS) as described previously [13 (link)]. Fura 2 (5 mM) was added to 1 mL of the cell suspension (1 × 106 cells) and incubated for 30 min at 37 °C in the dark. The fluorescence was continuously recorded using a fluorescence spectrofluorometer (Hitachi F-2000, Tokyo, Japan). Values of [Ca2+]i were then determined, and the background measured in unloaded cells was subtracted from all measurements according to our previous report [13 (link)].
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8

Lipid Peroxidation Measurement Protocol

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Based on the protocol of Uchiyama and Mihara [45 (link)], the samples were homogenized in 1.15% KCl solution, then mixed with 2-thiobarbitutric acid, followed by incubation in a boiling water bath for 45 min, and then cooled. After centrifugation at 1600× g, 4 ℃ for 10 min, the samples were kept at room temperature for 30 min, and then the supernatants were collected and measured using a Luminescence Spectrometer (Hitachi, F2000, Tokyo, Japan) with excitation at 520 nm and emission at 535 nm.
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9

Fluorescence Emission Spectra of Aromatic Amino Acids in Spinach Chloroplasts

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The fluorescence emission spectra of aromatic amino acids (AAA) in spinach chloroplasts were recorded on fluorescence spectrophotometer F-2000 (Hitachi, Tokyo, Japan) using excitation wavelength λex = 275 nm, excitation slit 20 nm, and emission slit 10 nm. The phosphate buffer used for dilution of the chloroplast suspension was the same as described above. Due to low aqueous solubility the compounds were added to the chloroplast suspension in DMSO solution. The DMSO concentration in all samples was the same as in the control (10%). The chlorophyll concentration in the chloroplast suspension was 10 mg/L.
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10

Quantifying IL-6 Levels in Nasal Fibroblasts

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IL-6 was assayed using a commercial ELISA kit (R&D Systems, Minneapolis, MN, USA) according to the manufacturer's protocol. In brief, nasal fibroblasts were incubated in 2.5% FBS, and the culture media were collected at the end of the incubation. Each well was blocked with blocking buffer for a minimum of 2 hours at room temperature, and washes were performed by filling each well with wash buffer. For detection, IL-6 antibody was added and incubated for 2 hours. A substrate solution was introduced to each well and was incubated for 20 minutes in the dark. Stop solution was added to each well and incubated for 30 minutes in the dark. If the subsequent color change did not appear uniform, the plate was gently tapped to ensure thorough mixing. The optical density of each well was determined within 30 minutes using a microplate reader (F2000; Hitachi Ltd., Tokyo, Japan) set to 450 nm.
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