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3 protocols using xrn1 a300 443a

1

Western Blot Protocol for Protein Detection

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Cells were counted, normalized for cell number, lysed in SDS sample buffer, separated by electrophoresis on NuPage 4–12% Bis-Tris gels (Novex) and blotted onto nitrocellulose membranes (GE Healthcare). Antibodies for PTBP1 (ab5642), Drosha (ab12286), DICR (ab14601), EXOSC6 (ab50910), EXOSC10 (ab50558), and PARN (ab188333) were obtained from Abcam. Antibodies for Upf1 (A300-036A), METTL3 (A301-567A), EXOSC4 (A303-775A), EXOSC5 (A303-887A), and Xrn1 (A300-443A) were obtained from Bethyl Labs. The antibody against ZAP (16820-1-AP) was obtained from Proteintech. The HIV-1 capsid antibody (183-H12-5C) was obtained from the NIH AIDS reagent repository. The GFP (G1546) antibody was obtained from Sigma. The HIV Env (12-6205-1) antibody was obtained from American Research Products. The HA (HA.11) antibody used in the CLIP assays was obtained from Biolegend.
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2

Antibody Sources for Protein Analysis

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Monoclonal E3L antiserum was a kind gift from S. Isaacs (Univ. Pennsylvania, PA). Polyclonal PABP1 antiserum was a kind gift of S. Morley (Univ. Sussex, UK). I3 antiserum was a kind gift of D. Evans (Univ. Alberta, Canada). All other antibodies were purchased commercially, as follows: Xrn1 (A300-443A; Bethyl Labs), α tubulin (6074; Sigma), eIF2α (5324; Cell Signaling), phospho(ser51)-eIF2α (3398; Cell Signaling), PKR (12297; Cell Signaling), phospho(T446)-PKR (32036; Abcam), PERK (5683; Cell Signaling), Hsc70 (10011384; Cayman Chemical); RNase L (13825; Abcam), dsRNA (J2; SciCons, Hungary). Phosphonoacetic acid (PAA) was from Sigma.
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3

Western Blot Protocol for Protein Detection

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Cells were counted, normalized for cell number, lysed in SDS sample buffer, separated by electrophoresis on NuPage 4–12% Bis-Tris gels (Novex) and blotted onto nitrocellulose membranes (GE Healthcare). Antibodies for PTBP1 (ab5642), Drosha (ab12286), DICR (ab14601), EXOSC6 (ab50910), EXOSC10 (ab50558), and PARN (ab188333) were obtained from Abcam. Antibodies for Upf1 (A300-036A), METTL3 (A301-567A), EXOSC4 (A303-775A), EXOSC5 (A303-887A), and Xrn1 (A300-443A) were obtained from Bethyl Labs. The antibody against ZAP (16820-1-AP) was obtained from Proteintech. The HIV-1 capsid antibody (183-H12-5C) was obtained from the NIH AIDS reagent repository. The GFP (G1546) antibody was obtained from Sigma. The HIV Env (12-6205-1) antibody was obtained from American Research Products. The HA (HA.11) antibody used in the CLIP assays was obtained from Biolegend.
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