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7 protocols using crystal violet assay kit

1

Cell Viability Assessment via Crystal Violet

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Equal numbers of cells were grown and treated as specified in the figure legends. Afterward, the medium was removed, and cells were washed with PBS and further grown in complete DMEM medium until colonies were visible. Then, the cells were washed with PBS, fixed with ice-cold methanol for 10 min, and stained with 0.5% (wt/vol) crystal violet in 25% (vol/vol) methanol for 10 min. The excess dye was removed by rinsing the cells twice with distilled water, and the plates were photographed. Results from crystal violet staining were quantified using the crystal violet assay kit (Abcam; catalog no. ab232855).
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2

Determining KYN Effect on BMSC Density

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To determine whether KYN affected BMSCs density, we utilized a Crystal violet Assay Kit (#ab232855 Abcam) according to the manufacturer's protocol. In brief, BMSCs were plated in 96 well plates at 5000 cells/well and cultured in DMEM for 24 h. Culture medium was then aspirated and replaced with StemXVivo Osteogenic/Adipogenic Base Media (#CCM007 R&D Systems) supplemented with StemXVivo Human Osteogenic Supplement (#CCM008 R&D Systems) with or without different doses of KYN (10, 50, 200 μM). After 3 days, the culture media was removed and the cells were washed and stained with the Crystal Violet Staining solution for 20 min at RT. Then, the staining solution was removed and the remaining stain was solubilized for 20 min with the Solubilization Solution. Finally, the Crystal Violet stain was quantified using a microplate reader at 595 nm.
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3

Cell Proliferation Modulation by iMDK and Rapamycin

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621-101 cells, TTJ cells, or normal human fibroblasts NHLF cells were seeded in 12-well plates in DMEM with 10% FBS at 20–30% confluency. Cells were treated with DMSO (control), iMDK (1 μM), rapamycin (20 nM), or combined iMDK (1 μM) and rapamycin (20 nM) until the control group reached over 100% confluency. Drugs were refreshed every 2 days to ensure maximum activity. Cell proliferation was assessed using Crystal violet Assay Kit (Cell viability) (ab232855, abcam).
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4

Cytotoxicity and Viability Assay for HNSCC

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The Crystal Violet Assay Kit (#ab232855; Abcam, Cambridge, UK) was used for cell cytotoxicity and cell viability studies, as previously described [22 (link)]. Briefly, the HNSCC cells were plated 3000–4000/well in 96-well plates and treated with hDT806, cetuximab (#A2000; Selleckchem, Houston, TX, USA), or erlotinib (#S1023; Selleckchem) following a 2-fold serial dilution. Five to seven days later, a crystal violet staining assay was performed according to the manufacturer’s instruction to determine cytotoxicity and cell viability. Optical density (O.D.) of each well was measured at 595 nm on a microplate reader. The percentage of viable (attached) cells against the values of untreated control samples were calculated to represent cell viability [23 (link)].
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5

Cardiomyocyte Metabolism Profiling by Seahorse

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Metabolic analysis was measured with Seahorse XFe24 analyzer using Seahorse XF substrate oxidation stress kits for glucose/pyruvate (Agilent, 103,673-100). To understand the changes in cardiomyocyte metabolism, adult WT and CTRP9-KO cardiomyocytes were isolated with Langendorff perfusion; 12,000 cardiomyocytes were then plated on Seahorse 24-well FluxPak plates and cultured for 24 h. On the next day, culture medium of the cells was exchanged with Seahorse XF DMEM (Agilent, 103,575-100), including 1 M glucose (Agilent, 103,577-100), 100 mM pyruvate (Agilent, 103,578-100) and 200 mM glutamine (Agilent, 103,579-100) and incubated in a non-CO2 incubator at 37 °C for 1 h. For experimental groups UK5099 (2 μM) inhibitor was loaded into the cartilage, while the control groups were treated with assay medium alone. Previously optimized amounts of oligomycin, FCCP and rotenone/antimycin A were also loaded into the cartilage. Substrate stress-test assays were run according to the manufacturer’s protocol and analyzed using Seahorse Analytics web-based software. Data were normalized to the number of cells, which was assessed with colorimetric measurement after staining with crystal violet assay kit (Abcam, Cambridge, UK, ab232855).
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6

Cytotoxicity Evaluation of EUFOC

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Abcam’s Crystal Violet Assay Kit (cell viability) (ab232855) and MTT reagents were used for cell viability assay. RAW 264.7 cells (5 × 104 cells/well) were seeded into 96-well plates and left to stabilize in a 37 °C incubator for 24 h, followed by treatment with the EUFOC (0.05, 0.1, 0.3, 0.5, 1.0, or 2.0%).
The MTT solution was added after 24 h to confirm cytotoxicity. The sample was removed after 2 h and 150 μL of DMSO was added to each well to dissolve the formed formazan, followed by the measurement of absorbance at 540 nm.
MTT was used to confirm the cytotoxicity of the EUFOC in keratinocytes. HaCaT cells were cultured in DMEM supplemented with 10% fetal bovine serum (FBS, Gibco, Grand Island, NY, USA) and 1% penicillin-streptomycin (PS, Gibco, Grand Island, NY, USA) under 5% CO2 at 37 °C. The cells were seeded in 96-well plates at a density of 2 × 104/well and then stabilized for 24 h. The EUFOC, diluted in serum-free medium, was further diluted with ethanol (70%) to prepare different concentrations of the sample. After 24 h, the medium was removed from the cells and 20 µL of MTT (5 mg/mL) was added, followed by incubation in a cell incubator (37 °C, 5% CO2) for 2 h. Next, MTT was removed, and 100 μL of DMSO was added. After ensuring that the crystals were dissolved in the stirrer, the absorbance was measured at 540 nm.
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7

Cell Viability Assay Protocols

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Cell viability was performed in a 96-well plate with density 3,000 cells per well, incubated with different media conditions for 24h or 72h, and was analyzed with CellTiter-Glo® Luminescent Cell Viability Assay (Promega, G7571) or Crystal Violet Assay Kit (Abcam, ab232855) according to the manufacturer’s instruction. For the crystal violet staining, cells were fixed in 3.7% PFA (Thermo Fisher, 28908) and staining with 0.05% crystal violet for 30min followed by three washes in water. The stained-wells were dried for few minutes and solubilized with 50% methanol. The plate was analyzed in a plate reader at 545 OD.
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