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Pet32a

Manufactured by Merck Group
Sourced in Germany, Japan

The PET32a is a laboratory instrument designed for positron emission tomography (PET) imaging. It is a core component of PET scanning systems used in medical research and diagnostics. The PET32a captures and processes data from PET scans, providing essential functionality for PET imaging applications.

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18 protocols using pet32a

1

Cloning and Expression of HcSTP-1 Protein

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The recognized recombinant pMD19-T/HcSTP-1 plasmid was digested with dual restriction enzymes BamH I and Xho I and ligated into prokaryotic expression vector pET32a (+) (Novagen, USA). Finally, the successful cloned STP-1 gene in a recombinant expression vector was sequenced to confirm its placement in the accurate reading frame. The recombinant plasmid pET32a (+)-HcSTP-1 was transferred into E. coli strain (BL21) and induced with 1 mM isopropyl-β-d-thiogalactopyranoside (IPTG; Sigma-Aldrich) after the OD600 of the culture reached 0.6 at 37°C. The cell pellet after centrifugation was lysed using 10 µg/ml of lysozyme (Sigma-Aldrich) followed by sonication, and was resolved on 12% (w/v) sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The purification of recombinant protein was carried out according to the manufacturer’s instructions of Ni2+-nitrilotriacetic acid (Ni-NTA) column (GE Healthcare, USA). The histidine-tagged protein (empty pET32a) used as control protein in multiple assays in this study was purified and expressed similar to the procedure described for rHcSTP-1 protein and determined at 12% SDS-PAGE after Coomassie blue staining and quantified by Bradford method (24 (link)).
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2

Recombinant Ts-MAPRC2 Protein Expression

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The restriction digestion of the plasmid (pMD19-T/ Ts-MAPRC2) was carried out using the enzymes viz., EcoR I and Hind III was cloned into the prokaryotic expression vector pET-32a (+) (Novagen, Beijing, China). Recombinant plasmid (pET32a (+)/Ts-MAPRC2) was then processed into BL21 (DE3) and induced protein expression by 1 mM IPTG (Isopropyl-β-D-thiogalactopyranoside) (Sigma-Aldrich, Shanghai, China). Further, cells were harvested and lysed by lysozyme (10 μg/mL) (Sigma-Aldrich, Kenilworth, NJ, USA), and by sonication. The sonicated outputs were subsequently confirmed on the SDS-PAGE (12% w/v). Recombinant Ts-MAPRC2 (rTs-MAPRC2) protein was purified by the His-TrapTM FF column following the manufacturer’s instructions (GE Healthcare, Piscataway, NJ, USA), and protein concentration was calculated by Pierce-TM BCA-Protein Assay Kit (Thermo Scientific, Waltham, MA, USA). Empty pET32a (histidine-tagged) protein was purified and expressed using the same procedure mentioned above for Ts-MAPRC2 and utilized vector-protein as a negative control. Pictures of the SDS-PAGE carrying the rTs-MAPRC2 purified protein were taken. The stock of rTs-MAPRC2 protein was prepared and preserved at −80 °C until the next experiments.
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3

Pathogen isolation and expression

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Y. ruckeri YRWEL01, a fish pathogen isolated from dying channel catfish in Sichuan province of China, was cultured in Brain-Heart Infusion (BHI) medium at 28°C and stored at our laboratory (17 (link)). Escherichia coli strains DH5α and BL21 (DE3) competent cells (Takara; Dalian, China) served as cloning and protein expression host, respectively. Both strains were grown in Luria-Bertani medium containing 100 μg/ml of ampicillin (Amp) at 37°C. Plasmids pMD19-T (Takara) and pET32a (+) (Merck, Germany) served as cloning and expression vectors, respectively. Montanide™ ISA763 A VG (Seppic, France) was selected for use as an adjuvant for the experiment.
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4

Bacterial UnaG Protein Expression and Purification

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To construct a bacterial expression vector carrying UnaG, pcDNA3-flag-UnaG19 (link) was digested with BamHI and EcoRI, and the isolated insert was ligated into the BamHI and EcoRI sites of pET32a (+) (Merck, Tokyo, Japan). Thus obtained pET-UnaG was transformed into the BL21 strain. UnaG was induced with 0.3 mM isopropyl thiogalactopyranoside (IPTG) and purified with nickel ion beads (Qiagen, Tokyo, Japan).
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5

Cloning and Mutagenesis of CXCL12

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The DNA sequence of CXCL12 was cloned from mouse peripheral blood mononuclear cells (PBMC) cDNA into the pBluescript II KS (Stratagene, La Jolla, CA, USA) and mutations were applied in the N-terminus using QuikChange® II site–directed mutagenesis kit (Stratagene) according to manufacturer*s instructions. This resulted in CXCL12 (S4V) variant and inactive control CXCL12 (S2G4V) resistant to MMP-2 and DPPIV enzymatic cleavage as reported previously by Segers et al. [13 (link)]. The cDNAs were subcloned into pET32a (Merck, Darmstadt, Germany) for expression as thioredoxin fusion proteins in Escherichia coli (see below). For the same purpose, Met-CCL5 was ordered as a codon-optimized synthetic gene cloned in pET26+ (Merck) from Genscript (Piscataway, NJ, USA). Detailed procedures can be found in the online supplementary information.
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6

Cloning and Expressing Renilla Luciferase

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Renilla reniformis luciferase gene (Rluc) was purchased from Promega Inc. The vector pET-32a (EMD Millipore Inc.) was used to subclone the Rluc. The E. coli strain BL21 (DE3) (invitrogen) was used as the bacterial strain for the expression of proteins. Restriction enzymes were purchase from New England Biolabs Inc. Unless otherwise indicated, all the chemicals were purchased from Sigma-Aldrich. Ultrahigh quality water with a resistance of 18.2 MΩ cm (at 25 °C) was obtained from a Nanopure™ water system (Thermofisher) fitted with a 0.22 µM filter.
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7

Expression and Purification of NHERF Proteins

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MBP–NHERF1/2 and GST-N–ezrin (GST-tagged N-terminal ezrin 1–309 aa) were purified as previously described [7 (link),33 (link)]. DNAs encoding the C-terminal fragments of NHERF1 and NHERF2 were generated by PCR and inserted into pET32a (EMD Millipore) for expressing both His6 and thioredoxin (His6–thioredoxin) fused recombinant proteins (Figure 1). These constructs were transformed into BL21(DE3) strain (EMD Millipore) for IPTG-induced protein expression. Proteins were purified with Ni-NTA resin following the manufacturer's instructions. Purified proteins were supplemented with 10% glycerol and 10 mM DTT and stored at −80°C.
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8

Expression and Purification of DUBm Complex

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Rosetta 2(DE3) pLysS cells (EMD Millipore, Merck KGaA, Darmstadt, Germany) were transformed with three plasmids encoding (1) Ubp8WT, or Ubp8C146A (pET-32a, EMD Millipore), (2) Sus1 (pRSF-1, EMD Millipore), and (3) Sgf73WT(1-96), Sgf73Y57A(1-96), Sgf73N59D(1-96), Sgf73N61D(1-96), Sgf73E79A(1-96), or Sgf73K83A(1-96) (pCDFDuet-1 MCSII, EMD Millipore), which was cloned into the same vector as Sgf11WT (pCDFDuet-1 MCSI, EMD Millipore). All versions of the DUBm complex were co-expressed and purified using the previously reported protocol for the expression and purification of wild-type DUBm [19 (link)].
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9

Pathogenic S. iniae Isolate Cultivation

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S. iniae DGX07 is a pathogenic isolate collected from diseased channel catfish in China and stored in our laboratory [29 (link)]. For this experiment, S. iniae DCX07 was cultured in brain-heart infusion (BHI) medium at 37°C. Escherichia coli DH5α and E. coli BL21 (DE3) cells were used as host strains for cloning and protein expression, respectively. Both cell lines were routinely grown in Luria-Bertani medium containing 100 μg/ml of ampicillin at 37°C. The plasmids pMD19-T simple (Takara Bio Inc., Otsu, Shiga, Japan) and pET32a (+) (Merck KGaA, Darmstadt, Germany) were used for T-A cloning and protein expression, respectively. Montanide™ ISA763 A VG (Seppic, Puteaux, France) was selected as a commercial adjuvant for the experiment.
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10

Purification and Characterization of Recombinant Serine Protease Inhibitors

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Bacterial codon optimized genes encoding for AaTI and Inf4 were purchased from Bio Basic Asia Pacific Pte Ltd (Singapore) and subcloned into a modified version of the pET32a (Merck; Kenilworth, NJ) prokaryotic expression vector. Protein expression was carried out using IPTG (isopropyl β-d-1-thiogalactopyranoside) induction in SHuffle T7 competent Escherichia coli cells (New England Biolabs; Ipswich, MA). His-tagged proteins were purified using the cOmplete His-tag purification resin (Merck) and the eluate was further purified using size-exclusion chromatography using Hiload 16/600 Superdex 75 pg column (16 × 600 mm) (GE Healthcare; Chicago, IL). The His-tag remains intact in all the recombinant wild-type and chimeric proteins used in this study. Purified proteins were tested for inhibitory activities against human FXIIa (Merck). All wild-type, mutant and chimeric proteins used in this work were dissolved in a 50 mM Tris-HCl, pH 7.4 buffer, with 200 mM NaCl.
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