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11 protocols using cd40 apc

1

Multicolor Flow Cytometry Analysis

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Cells were harvested for staining and incubated with Fc-block for 10 min at room temperature. Cells were stained for 1 h at 4°C with CD11c—PE or FITC, CD40—APC, CD80—FITC, CD86—APC-cy7 (BD bioscience). Cells were fixed using Fix & Perm (Life Technologies) following manufacturer's instructions. Intracellular staining was performed using iNOS—PE (ebioscience). For glucose uptake assays, 50 ul fluorescent glucose analog (2-NBDG-FITC) was added to the cells 120 min before harvest. CFSE labeled T. gondii was used for uptake assays. A total of 30, 000–50, 000 events per sample was acquired on a BD FASCanto and data analysis was carried out using FlowJo software.
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2

Measuring APC-Mediated E. coli Killing

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A total of 2.5 × 106 liver-isolated APCs from different groups were incubated with the same amount of E. coli colony-forming units (CFUs) in the presence of autologous rat serum with HBSS in a final volume of 1 mL in an orbital shaker at 37 °C at 50 rpm. APCs and E. coli were incubated together for 20 min to measure baseline E. coli-binding and internalizing capacity of APCs (T0) and 2 h (T2) to measure APCs’ ability to kill E. coli. Cells were washed after incubations and subjected to a 30% sucrose centrifugation to separate non-bound E. coli from APCs. Resting APCs were resuspended in 1 mL HBSS 5% serum and diluted 1:5 in sterile water to release APC content. Dilutions were seeded in agar plates (Biomerieux, Marcy l’Etoile, France) and incubated overnight at 37 °C. CFUs were counted, and values were represented for each APC in the different study groups.
Cell surface expression of CD40-APC, CD80-PE, and CD86-FITC and their respective isotype controls (BD Biosciences, San Diego, CA, USA) was measured by flow cytometry in isolated DCs, HMs, and LSECs from animals in the different study conditions using a FACSCanto II flow cytometer operated by FACSDiva software (BD Biosciences, San Diego, CA, USA). Representative images of CD40, CD80, and CD86 and their isotype-matched controls are shown in Figure S4 for control rats.
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3

BMDC Activation Assay with MCA205 Cells

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BMDC were stained with 1 µM CFSE for 10 min at 37 °C in PBS, washed and seeded at 5 × 104 cells/well in 96 well suspension plates. Next, BMDC were co-cultured with MCA205 cells in ratios 1:1; 1:5; 1:10 (BMDC:MCA205) or stimulated with 250 ng/ml of LPS (#L-2630, Sigma Aldrich). After O/N co-culture, cells were collected, washed in ice-cold FACS buffer and stained for surface markers: CD11c-BV650 (#117339, BioLegend, 1:200), MHCII-APC/eFluor700 (#47-5321-82, eBioscience, 1:100), CD86-PE/Cy7 (#105116, BioLegend, 1:200), CD80-PE/Cy5 (#104712, BioLegend, 1:200), CD40-APC (#558695, BD Pharmingen, 1:200) and CD274-PE (#12-5982-82, eBioscience, 1:200). The acquisition was performed with a LSRII flow cytometer using BD FACSDIVA 8.0 software and the analysis was performed using FlowJo 10.2 software.
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4

Immunophenotyping of BDCA-1+ and BDCA-3+ Dendritic Cells

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For analysis of the phenotype of BDCA-1+/BDCA-3+ myDC, cells were stained with CD11c-Alexa Fluor 700 (BD Biosciences, clone B-ly6), CD1c-Brilliant Violet 510 (BD Biosciences, clone F10/21A3), CD141-PE/Cy7 (Invitrogen, clone JAA17), CD274-PE-CF594 (BD Biosciences clone MIH1), CD86-Brilliant Violet 421 (BD Biosciences, clone 2331 (FUN-1)), CD83-PE (BD Biosciences, clone HB15e), CD40-APC (BD Biosciences, clone 5C3), CD80-PE/Cy5 (BD Biosciences, clone L307.4), HLA-ABC-FITC (BD Biosciences, clone G46-2.6), Zombie Yellow (Biolegend) for 20 minutes at 4°C. After washing, cells were resuspended in PBS/0.5%BSA and acquired on a BD LSR Fortessa instrument. Data analysis was performed using FlowJo software. The gating strategy was as follows: cells were first gated on FSC/SSC characteristics, followed by gating on single cells. Next, dead cells were excluded and subsequently we gated on the CD11c+ population. On this gate, CD1c+ CD141- cells were identified as BDCA-1+ myDC and CD1c- CD141+ cells as BDCA-3+ myDC. Subsequently, we evaluated for each myDC subtype the expression of HLA-ABC, CD83, CD274/PD-L1, CD80, CD40 and CD86.
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5

Comprehensive Immune Cell Phenotyping

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PBMC (1–4×106 cells/tube) were stained with monoclonal antibodies to B cell markers (CD19-AF700, IgM-PerCP-Cy5.5, IgD-PE-Cy7 (Biolegend), CD38-FITC, CD21-PE, CD10-PE-CF594, CD40-APC, CD86-BV421 (BD Pharmingen)) and T cell markers (CD3-AF700, CD4PacBlue (Biolegend), CD8-APC-AF750 (Invitrogen), CD45RA-ECD, CD27-PE-Cy5 (Beckman Coulter), CD27-BV650, CD38-FITC, HLA-DR-PE-Cy7, PD-1-APC, CXCR5-PE (R&D Systems)) for 40 minutes at room temperature. Stained cells were subsequently washed twice and fixed in 1% paraformaldehyde for 10 minutes at 4°C. Data was acquired within 4 hours using a BD LSRII flow cytometer (BD Biosciences – Immunocytometry Systems, San Jose, CA). Data were analyzed using Flow Jo Software (Tree Star Inc., Ashland, OR) with the gating scheme as per Supplemental Figure 1.
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6

Influenza Vaccine Immunogenicity Assessment

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AEAR was prepared in our lab [22 (link)]. 2014/2015 seasonal influenza virus split vaccine was purchased commercially from Shenzhen sanofi Pasteur biological products co., LTD (Shenzhen China). Goat anti-mouse peroxidase conjugates (IgG-HRP, IgG1-HRP and IgG2a-HRP) were purchased from Southern Biotech Inc. USA. Concanavalin A (ConA), lipopolysaccharide (LPS, from Escherichia coli 055:B5) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were from Sigma-Aldrich Co. LLC. USA. Imject Alum Adjuvant (Alum) was from Thermo Scientific Pierce USA. CD11c-FITC, CD3-PE, CD4-APC, CD8a-FITC, CD44-PE, CD25-APC, Foxp3-PE, IFN-γ-PE, IL-4-PE, CD86-PE, CD40-APC, CD80-APC, MHC-II-PE, Cytofix/Cytoperm and Perm/Wash buffer were purchased from BD Bioscience USA. Carboxyfluorescein diacetate succinimidyl ester (CFSE), Treg staining kit were from eBioscience USA. All the other reagents were analytically purified in China.
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7

Multiparametric Flow Cytometry Analysis

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PE-Cy™7-CD4 (Clone: RM4-5), APC-Cy™7-CD69 (Clone: H1.2F3), APC-Cy™7-CD45 (Clone: 30-F11), APC-Cy™7-CD19 (Clone: 6D5), PE-Cy™7-MHC II (Clone: M5/114.15.2), PE-Foxp3 (Clone: MF-14), FITC-Ly6C (Clone: HK1.4), BV421-CD11b (Clone: M1/70) were purchased from Biolegend. PE-F4/80 (Clone: BM8), APC-IFN-γ (Clone: XMG1.2), Biotin-CD11c (Clone: N418) were purchased from eBioscience. APC-Cy™7-CD4 (Clone: GK1.5), APC-CD40 (Clone: HM40-3), APC-CD25 (Clone PC61), PerCP-Cy™5.5-CD80 (Clone: 16-10A1), FITC-CD3e (Clone: 145-2C11), PE-IL-17a (Clone: TC11-18H10), Sav-BUV395 were purchased from BD Biosciences. Flow cytometry data were acquired on BD LSR II flow cytometer as previously described40 and analyzed with FlowJo™ v10.7.
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8

Peripheral Blood Immune Cell Profiling

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The absolute counts of total lymphocytes, monocytes, and neutrophils in the peripheral blood of all subjects were measured by flow cytometry with a Guava easyCyte 8 system (Merck Millipore, USA). Cell-surface monocyte phenotypic analysis was performed after staining with human anti-CD14 1 (link) and anti-CD16 1 (link). Fluorochrome-conjugated monoclonal antibodies allophycocyanin (APC)-CD40, phycoerythrin (PE)-CD86, APC-HLA-DR, PE-CD11b, APC-CD11c, APC-CD62L, PE-CD68, PE-CD4, peridinin chlorophyll protein complex (PerCP)-CD3, PE-CD45RO, APC-CCR7, fluorescein isothiocyanate (FITC)-CD40L, and PE-CD163 were purchased from BD Biosciences Pharmingen (Franklin Lanes, NJ, USA).
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9

Dendritic Cell Activation Assay

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Recombinant GM-CSF, IL-4, and naïve CD4 T cell enrichment kit, Abs to IL-12p40/70, TNF-α, IL-6, IFN-γ, IL-17, PE-Cy7-CD11c, FITC-CD80, PE-CD86, efluor-MHCII, APC-CD40, STAT-1, pSTAT-1, STAT-4, pSTAT-4, JNK, and pJNK were purchased from BD Biosciences (San Diego, CA, USA). Biotinylated anti-CD83 and APC-conjugated CCR7 Abs were purchased from eBioscience (San Diego, CA, USA). Abs against actin were from Sigma (St. Louis, MO, USA), SOCS-3 from Abcam (Cambridge, MA, USA) and anti-pERK and ERK Abs from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The endotoxin removal column was purchased from Thermo Scientific (Rockford, IL, USA).
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10

Evaluating BMDC Activation and Viability

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Primary BMDCs were harvested and stimulated with different concentrations of EPZ015666 (Selleck) in the presence or absence of LPS (100 ng/mL) (Sigma). After the indicated times, BMDCs were either stained with annexin V and propidium iodide according to the manufacturer’s instructions (BD Pharmingen, Oxford, UK) for the cell viability test or prepared for flow cytometry analysis. Briefly, stimulated BMDCs were collected, washed and resuspended to a density of 2×107 cells/mL. Then, 50 µL of cell suspension was distributed into tubes and preincubated with Fc block (BD) for 5 min. Predetermined optimal amounts of anti-mouse Cy5.5-CD11c, PE-Cy7-CD86, APC-CD40, PE-CD80, Alexa647-MHC-II (all BD) and PE-MHC-I (Biolegend, San Diego, CA, USA) antibodies were added and then incubated with cells for 30 min on ice. The cell samples were washed twice to remove excess antibody, resuspended in 500 µL of staining buffer (all BD), and analyzed with a FACS LSRFortessa flow cytometer (BD Bioscience, CA, USA) within 1 h. FlowJo software (Tree Star, OR, USA) was used to analyze the flow cytometry data.
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