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Anti dnmt3b

Manufactured by Cell Signaling Technology
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Anti-DNMT3B is a primary antibody that specifically recognizes the DNA methyltransferase 3B (DNMT3B) protein. DNMT3B is a key enzyme involved in de novo DNA methylation, a critical process for regulating gene expression and maintaining genomic integrity. This antibody can be used to detect and study the DNMT3B protein in various experimental applications.

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11 protocols using anti dnmt3b

1

Immunohistochemical Analysis of Tumor Markers

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Tumour graft samples anatomized from mice were analysed by immunohistochemical staining. The associated antibodies are as follows: anti‐Ki‐67, anti‐CCND1, anti‐NOP14 (Proteintech) and anti‐DNMT3B (Cell Signaling Technology). Antigen retrieval was performed by heating the slides in sodium citrate buffer (10 mmol/L, pH 6.0). After blocking with bovine serum albumin (Sango Biotech, Shanghai, China), the slides were incubated with anti‐Ki‐67, anti‐CCND1, anti‐NOP14 (Proteintech) and anti‐DNMT3B (Cell Signaling Technology) overnight at 4°C. The slides were then incubated with the secondary antibody goat anti‐rabbit HRP (Cell Signaling Technology) conjugate for 1 hours at room temperature. A DAB solution was used for brown colour development. The strength of positivity was used to semiquantify the strength of positivity, which considered the intensity of the staining and the percentage of positive cells per the formula.
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2

Total Protein Extraction and Western Blot Analysis of Breast Cancer Cells

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Total protein extraction from cultured breast cancer cells were performed using RIPA lysis buffer containing 1X protease inhibitor cocktail. After protein concentrations measurement using the BCA method, equal protein (about 20–30 μg) from different samples were separated by 10% SDS‑PAGE and subsequently transferred into the polyvinylidene difluoride (PVDF) membranes (Millipore Corp., Billerica, MA, USA). Next, the membranes were immersed into 5% non-fat milk diluted in TBST for 1 h at room temperature, followed by incubation with the indicated primary antibodies overnight at 4 °C, including anti‑RSK4 (1:2000 dilution; No.ab76117, Abcam), anti‑SP1 (1:1000 dilution; No. ab227383, Abcam), anti-DNMT1 (1:2000 dilution; No. #5032, Cell Signaling Technology, MA, USA), anti-DNMT3A (1:2000 dilution; No. #2160, Cell Signaling Technology), anti-DNMT3B (1:2000 dilution; No. #67,259, Cell Signaling Technology), anti-Ub (1:1000 dilution; No. #3933, Cell Signaling Technology) and anti-GAPDH (No. ab181602, Abcam). After being washed with Tris Buffered Saline with Tween-20 (TBST) for 3 times, the membranes were probed with the corresponding secondary antibodies at room temperature for 1 h. Band intensity was measured using chemiluminescent reagents (Millipore) and quantified by ImageJ software (verson1.48, National Institutes of Health, MD, USA).
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3

Western Blot Analysis of Mitochondrial Proteins

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Proteins from HUVECs were extracted with RIPA lysis buffer (Beyotime, Shanghai, China) containing 1% PMSF (Beyotime, Shanghai, China) and quantified using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to 0.22-μm PVDF membranes (Millipore, Billerica, MA, USA), and incubated overnight at 4 °C with specific antibodies: anti-p16, anti-p21, anti-FIS1, anti-SAHH (Abcam, Cambridge, UK), anti-p53, anti-Drp1, anti-OPA1, anti-MFN1, anti-MFN2, anti-DNMT1, anti-DNMT3A, anti-DNMT3B, and anti-GAPDH (Cell Signaling Technology, Danvers, MA) followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA). The dilution ratio was 1:1000 for the primary antibodies and 1:10,000 for the secondary antibodies. Protein bands were visualized with Super Signal Chemiluminescence Substrate (Thermo Scientific, Waltham, MA, USA) and GAPDH was used as a control. Images were captured using the FluorChem E system (Protein Simple, Minneapolis, MN, USA) and band densities were quantified using image J software (NIH, Bethesda, MD, USA). The densities of the bands were normalized to that of GAPDH.
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4

Protein Expression Analysis of Cell Lysates

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Whole cell lysates were prepared in NP-40 buffer containing protease inhibitor cocktail (ThermoFisher Scientific). Immunoblotting was performed with anti-MUC1-C (62 (link)), anti-RASSF1A (Abcam, Cambridge, MA, USA), anti-β-actin (Sigma), anti-ZEB1, anti-DNMT3b, anti-pMEK(S217/S221), anti-MEK, anti-pERK(T202/Y204) and anti-ERK (Cell Signaling Technologies, Danvers, MA, USA).
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5

Western Blot Analysis of Cellular Proteins

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Cells were lysed using lysis buffer following our published protocol (Yang et al., 2006 (link); Wang et al., 2014 (link)). The cell lysates were then applied to the bicinchoninic acid assay (Bio-rad) to determine protein concentration, followed by SDS-polyacrylamide gel electrophoresis (PAGE) (20–30 μg of protein/lane). The separated proteins were then transferred to polyvinylidene fluoride membrane (PVDF, Millipore, MA). Five percent milk in PBS was applied for the blocking step before primary antibody incubation. The following primary antibodies were used: anti-DNMT1, anti-DNMT3A, anti-DNMT3B, anti-phospho-Rb (S780), anti-phospho-Rb (S807/811), anti-Rb, anti-E2F1, anti-p21, anti-Mcl-1, anti-Bcl-xL, anti-Puma, anti-Bim, anti-Bik, anti-Bid, anti-Bax, anti-Bad, anti-cleaved caspase 3, anti-caspase 3, (Cell Signaling Technology, Beverly, MA) (dilution 1:1000); and anti-β-actin (Millipore Sigma, St. Louis, MO) (dilution 1:8000). After overnight primary antibody incubation at 4 °C, the membranes were washed and then incubated with HRP-conjugated antibodies for 1 h at room temperature. Images were developed by Amersham Imager 680 (GE Healthcare Life Sciences, MA).
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6

Western Blot Antibody Screening Protocol

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Western blot assays were conducted as previously described.8 The associated primary immunoblotting antibodies were as follows: anti‐GAPDH, anti–E‐cadherin, anti–N‐cadherin, anti‐Vimentin, anti‐CDK6, anti‐CCND1, anti‐CDK4, anti‐NOP14, anti‐MMP9, anti‐MMP2, anti‐E2F1, anti‐MET, anti‐Parp‐1, (Proteintech Group), anti‐Caspase 3, anti‐DNMT3B (Cell Signaling Technology) and anti‐SP1 (Santa Cruz Biotechnology).
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7

Protein Expression Analysis of Stem Cells

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Cells were lysed using lysis buffer and extracted for 20 min on ice. Whole-cell extractprotein (30 μg) was subjected to electrophoresis on 10% SDS-PAGE gel and transferred to nitrocellulose membranes. Then membranes were incubated with the following primary antibodies: rabbit anti-Nanog, anti-Oct-4, anti-Sox-2 (dilution 1:1000, Proteintech, Rosemont, USA), rabbit anti-DNMT1, anti-DNMT3A, anti-DNMT3B (dilution 1:1000, Cell Signaling Technology, Danvers, MA, USA), and rabbit anti-GAPDH (dilution 1:2000, Antgene, Wuhan, China).
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8

Western Blot Analysis of Protein Expression

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Cells were scraped from culture plates and incubated for 20 min in ice‐cold lysis buffer containing protease inhibitor cocktails. Nuclear and cytoplasmic fractions were prepared as described previously.[29 (link)
] Total protein (10 µg) was separated by SDS‐PAGE and transferred to a PVDF membrane (Bio‐Rad). The membrane was incubated with primary antibodies, and the protein was visualized with ECL (HRP) (Millipore). The following antibodies were used for western blot analysis: anti‐Pten (Cell Signaling Technology, 9188), anti‐β‐actin (Immunoway, YM3028), anti‐p‐T308‐Akt (Cell Signaling Technology, 13038), anti‐p‐S473‐Akt (Cell Signaling Technology, 4060), anti‐Akt (Cell Signaling Technology, 4691), anti‐cTnT (Abcam, ab8295), anti‐Dnmt3l (Cell Signaling Technology, 13451), anti‐Dnmt3b (Cell Signaling Technology, 48488), anti‐Dnmt3b (ab122932, Abcam), anti‐Igf1r (Cell Signaling Technology, 3027), anti‐p‐S253‐FoxO3a (Abcam, ab47285), anti‐p‐T32‐FoxO3a (Cell Signaling Technology, 9464), anti‐FoxO3a (Cell Signaling Technology, 2497), anti‐Phospho‐p44/42 MAPK (Erk1/2) (Cell Signaling Technology, 4370), anti‐ Insulin Receptor β (Abcam, ab69508), anti‐p44/42 MAPK (Erk1/2) (Cell Signaling Technology, 4695), anti‐β‐Tubulin (Cell Signaling Technology, 2146), and anti‐Lamin A/C (Cell Signaling Technology, 4777).
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9

ChIP-PCR Analysis of DNMT3B Binding

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A SimpleChIP® Enzymatic Chromatin IP Kit (Magnetic Beads) (Cell Signaling Technology, #9003) was used following the manufacturer’s instructions. Briefly, crosslinking was performed by fixing 4 × 106 cells with 37% formaldehyde for 10 min at room temperature, and the crosslinking reaction was quenched by glycine. Sonication and enzymatic digestion were used to digest chromatin from the lysed cells. Chromatin was then immunoprecipitated using anti-DNMT3B (Cell Signaling Technology, D7070) and standard rabbit-IgG antibodies. Next, chromatin immunoprecipitation (ChIP)-enriched DNA was amplified using PCR, and the primer sets were designed as follows: Beclin1: 5′-GGTCAGCGAGACCCTTGGAA-3′ (sense) and 5′AGAATTATATCACCAAAGCTGCCC-3′ (anti-sense). The PCR products were loaded onto 2% agarose gels and observed using ultraviolet light.
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10

Protein Expression Analysis of Cell Lysates

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Whole cell lysates were prepared in NP-40 buffer containing protease inhibitor cocktail (ThermoFisher Scientific). Immunoblotting was performed with anti-MUC1-C (62 (link)), anti-RASSF1A (Abcam, Cambridge, MA, USA), anti-β-actin (Sigma), anti-ZEB1, anti-DNMT3b, anti-pMEK(S217/S221), anti-MEK, anti-pERK(T202/Y204) and anti-ERK (Cell Signaling Technologies, Danvers, MA, USA).
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