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7 protocols using chloroquine

1

Chloroquine-Induced Autophagy Evaluation

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Control and patient myoblasts and myotubes were incubated with 60 µM chloroquine (Abcam) diluted in proliferation or differentiation medium for 24 h. Cells were collected as described above and the cell pellet was processed for protein extraction. Patient and control myoblasts and myotubes were also cultivated in glass coverslips, and incubated with 60 µM chloroquine (Abcam) diluted in proliferation or differentiation medium for 24 h. Live cells were used for Lysosensor experiments. In addition, cells were fixed and processed as described above for Lc3 immunofluorescence. Finally, myotubes were fixed and processed for fusion index calculation.
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2

Identifying Conditions for K11/K48-linked Chain Formation

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To identify conditions of K11/K48-linked chain formation HEK 293T or HeLa cells were treated with different drugs: Epoxomycin (1µM, 6h, Sigma-Aldrich), MG132 (10µM, 6h, Sigma-Aldrich), Pifithrin µ (10µM, 6h, Sigma-Aldrich), VER155008 (40µM, 6h, Sigma-Aldrich), 17 DMAG (1µM, 6h, Sigma-Aldrich), Chloroquine (100µM, 6h, Abcam), DBEQ (10µM, 6h, Sigma-Aldrich), Oligomycin/Antimycin (each 10µM, 1h, Sigma-Aldrich), CCCP (10µM, 2h, Abcam), Cycloheximide (100µg/mL, 6h, Sigma-Aldrich), Puromycin (25µM, 1h, Sigma-Aldrich), DTT (2mM, 6h), Tunicamycin (10µg/mL, 2h, Sigma-Aldrich), Doxorubicin (5µM, 6h, Sigma-Aldrich). Translation and transcription inhibitors were used at the following concentrations: Cycloheximide (100µg/ml), Harringtonine (2µg/ml), Emetine (20µg/ml), Puromycin (1µg/ml), α- Amanitin (5µg/ml). Accumulation of K11/K48-linked chains was monitored by Western blot or immunofluorescence microscopy.
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3

Larval Autophagy Modulation Assay

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Dissected L3 feeding larvae were incubated at RT in Schneider’s Drosophila medium containing 2 μM Bafilomycin A (cat# ab120497; Abcam), 15 mg/ml chloroquine (cat# ab142116; Abcam), 0.25 mg/ml Cytochalasin D (cat# PHZ1063; Invitrogen), or 100 μg/ml BFA (cat# S1536; Beyotime). After culture of 6 h (Cytochalasin D and BFA) or 12 h (Bafilomycin A and chloroquine), samples were fixed in PBS containing 4% paraformaldehyde (20 min), washed in PBS (3 × 15 min), and mounted in DAPI-Vectashield.
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4

Inhibition of HEV by Antimalarial Drugs

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The approved antimalarial drugs chloroquine (CQ; Abcam, cat. no. ab142116), hydroxychloroquine (HCQ; Abcam, cat. no. ab120827), artesunate (ART; Sigma-Aldrich, cat. no. A3731), and ribavirin (RBV; Santa Cruz Biotechnology, cat. no. sc-358731), which was used as a positive control, were tested for their inhibitory activity against HEV. Ribavirin triphosphate (RTP; Santa Cruz Biotechnology, cat. no. sc-358826) was used as a positive control for in vitro enzymatic assays. Stock solutions were prepared in nuclease-free water for chloroquine (1 mM), hydroxychloroquine (1 mM), ribavirin (2 mM), and ribavirin triphosphate (1 mM) and in 100% acetone for artesunate (86 mM). A working solution of 1 mM artesunate was prepared in nuclease-free water. Stock solutions of all drugs were stored at -20° C in aliquots until use.
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5

Nutlin-3a and Erlotinib Drug Preparation

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Nutlin-3a and Erlotinib were purchased from Selleck chemicals (Houston, TX, USA). MG132 was from Beyotime Biotechnology (Shanghai, China). Chloroquine was from Abcam (Cambridge, UK), and all other chemicals were of analytical grade and purchased from Sigma Chemical (Burlington, USA). For in vitro and in vivo studies, Nutlin-3a was reconstituted in dimethyl sulfoxide (DMSO) and 2% DMSO/1% hydroxyethyl cellulose/0.2% Tween-80, respectively.
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6

Inhibition of Cellular Pathways

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NDGA (Sigma), C646 (Sigma), A485 (Tocris), and Bafilomycin A1 (Adipogen) were dissolved in dimethyl sulfoxide (DMSO) (Sigma-Aldrich), Chloroquine (Biovision) was dissolved in water. Phosphate-buffered saline (PBS) was purchased from Corning. Tris-buffered saline with Tween (TBST) buffer (150 mM NaCl, 0.01% (v/v) Tween-20, 50 mM Tris-HCl buffer, pH 7.6) was used for immunoblotting. Blocking buffer and primary antibody incubation solution was 5% (w/v) BSA (Sigma), pH 7.0, in TBST. Secondary antibody incubation buffer was 5% (w/v) blocking reagent (Sigma) in TBST.
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7

Synchronized Worm Lifespan Assays

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Worms were synchronized by treating gravid adults with bleaching solution (H2O:bleach:5 N NaOH 7:2:1). Animals were washed three times in M9 buffer and incubated in M9 buffer on a rotor. On days 5 and 10, 30 μl of M9 were plated on an NGM plate; after 1 h, the percentage of alive larval stage 1 worms was measured. For the colocalization assays, starvation was performed for 6 h and chloroquine (catalog no. 1825; BioVision) was added on plates at 5 μM concentration 3 h before imaging. For heat stress, day 1 adult animals were placed in a 37 °C incubator for 1 h and survival was scored on days 2 and 4 of adulthood. For ultraviolet-C-induced DNA damage, day 1 worms were placed on ultraviolet-inactivated OP50 bacteria and treated with either 200 J m2 or 400 J m2 ultraviolet-C irradiation using an ultraviolet crosslinker (BIO-LINK-BLX-E365; Vilber Lourmat).
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