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5 protocols using mouse anti rat β actin monoclonal antibody

1

Western Blot Analysis of Signaling Pathways

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The harvested cells were lysed in lysis buffer on ice and the cell extracts were clarified by centrifugation (at 9,500 × g). The protein concentrations were determined by spectrophotometry using the Pierce™ BCA Protein Assay kit (Thermo Fisher Scientific, Rockford, IL, USA). Aliquots containing 30 µg of protein were separated by SDS-polyacrylamide gel electrophoresis on a 10% gel, and the separated proteins were blotted onto polyvinylidene difluoride membranes in a wet transfer unit (Bio-Rad Laboratories, Hercules, CA, USA). After blocking with 5% non-fat dry milk at room temperature for 1 h, the membranes were incubated overnight at 4°C with following primary antibodies: rabbit anti-rat GPR91 polyclonal antibody (1:1,000), rabbit anti-rat p-ERK1/2 monoclonal antibody (1:3,000), rabbit anti-rat ERK1/2 monoclonal antibody (1:3,000; #4695), rabbit anti-rat p-JNK monoclonal antibody (1:1,000), rabbit anti-rat JNK monoclonal antibody (1:1,000; #9252), rabbit anti-rat p-p38 monoclonal antibody (1:1,000), rabbit anti-rat p38 monoclonal antibody (1:1,000; #9212), goat anti-rat COX-2 polyclonal antibody (1:200; sc-1745; Santa Cruz Biotechnology, Dallas, TX, USA) and mouse anti-rat β-actin monoclonal antibody (1:5,000; A5441; Sigma-Aldrich, St. Louis, MO, USA). The bands were visualized using an enhanced ECL detection kit (Pierce Biotechnology, Rockford, IL, USA).
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2

Rat Dendritic Cell Phenotyping

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RPMI-1640 medium (Thermo Fisher Scientific, Waltham, MA, USA), fetal bovine serum (Thermo Fisher Scientific), rrIL-10 (Boehringer, Ingelheim, Germany), rrGM-CSF (Boehringer), mouse anti-rat Alexa Fluor 647-labeled OX62 antibody, mouse anti-rat FITC-labeled MHC-II antibody (dilution, 1:100; cat. no. 205305), mouse anti-rat PE-labeled CD86 antibody (1:500; cat. no. 200308) all from (Biolegend, San Diego, CA, USA), mouse anti-rat OX62 (Sigma, St. Louis, MO, USA), mouse anti-rat MHC-II monoclonal antibody (dilution, 1:1,000; cat. no. SAB3500125), mouse anti-rat β-actin monoclonal antibody (dilution, 1:1,000; A5316) all from (Sigma, St. Louis, MO, USA), goat anti-mouse fluorescent secondary polyclonal antibody (dilution, 1:2,000; cat. no. 115-005-072; Jackson ImmunoResearch Inc., West Grove, PA, USA), 40% omethoate EC (Chongqing Pesticide Chemical Co., Chongqing, China).
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3

Quantitative Western Blot Analysis of NLRP3

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Hippocampus was processed and total protein determined as described under ELISA. Samples were heated to 75 °C for 10 min and loaded into a standard polyacrylamide Bis-Tris gel (Invitrogen). SDS-PAGE was performed in MOPS running buffer (Invitrogen) at 175 V for 1.25 h. Protein was transferred onto a nitrocellulose membrane using the iBlot dry transfer system (Invitrogen). The membrane was blocked with Odyssey blocking buffer (LI-COR Biosciences, Lincoln, NE) for 1 h and incubated with a primary antibody in blocking buffer containing Tween 20 (0.2%) overnight at 4 °C. The following day, the membrane was washed in 1x PBS containing Tween 20 (0.1%) and then incubated in blocking buffer (0.2% Tween 20) containing either goat anti-rabbit or goat anti-mouse (LI-COR) IRDye 800CW secondary antibody at a concentration of 1:10,000 (LI-COR) for 1 h at RT. The membrane was washed in 1x PBS containing Tween 20 (0.1%). Protein expression was quantified using an Odyssey Infrared Imager (LI-COR) and expressed as a ratio to the housekeeping protein (β-actin). Primary antibodies included rabbit anti-rat NLRP3 monoclonal antibody (1:4000, Abcam, Cambridge, MA) and mouse anti-rat β-actin monoclonal antibody (1:200,000, Sigma).
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4

Rat Hippocampal CA1 Protein Analysis

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Rat hippocampal CA1 tissues were rapidly isolated on ice at 2 days post-reperfusion. Total proteins were extracted and their concentration was determined by the Bradford method. We used a Cytoplasmic and Nuclear Extraction Kit (Invent Biotechnologies, Plymouth, MN, USA) to extract cytoplasmic and nuclear proteins. Forty microgram protein per lane were subjected to 15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis for LC3 testing and 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis for AIF, RIP3, RIP1, and mixed lineage kinase domain-like polyclonal antibody (MLKL) testing. Then, the proteins were transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membrane was blocked with 5% non-fat milk and incubated with rabbit anti-rat LC3 polyclonal antibody (1:1000; Cell Signal Technology), rabbit anti-rat RIP1 monoclonal antibody (1:1000; Cell Signal Technology), mouse anti-rat AIF monoclonal antibody (1:500, Abcam), rabbit anti-rat RIP3 polyclonal antibody (1:200, Biovision), rabbit anti-rat MLKL (1:500, Abcam), or mouse anti-rat β-actin monoclonal antibody (1:1000; Sigma) at 4 °C overnight. After three washes, the membranes were incubated with HRP anti-mouse or HRP anti-rabbit secondary antibody (1:10000; Jackson) for 2 h. Bands were evaluated by the enhanced chemiluminescence method and were analyzed using ImageJ software.
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5

Quantitative Analysis of Extracellular Matrix

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TRIzol, RNase-free DNase I and reverse transcription kits were purchased from Promega Corporation (USA). Quantitative fluorescence PCR (QF-PCR) kits were purchased from Applied Biosystems (USA). QF-PCR primers were synthesized by Beijing SBS Genetech (China). Mouse anti-rat monoclonal antibodies against collagen I, collagen III, matrix metalloproteinase 1 (MMP1), tissue inhibitor matrix metalloproteinase 1 (TIMP1), TGF-β1, and transforming growth factor-β type I receptor (TβR1) were purchased from R&D Systems (USA). Mouse anti-rat β-actin monoclonal antibody was purchased from Sigma-Aldrich (USA).
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