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4 protocols using anti mouse cd45 alexa fluor 647

1

Sorting Cancer Cells with Flow Cytometry

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For sorting of cancer cells, T8 OGO tumors were processed as previously described (Biffi et al., 2019 (link)). Cells were stained for 30 min with anti-mouse CD45-Alexa Fluor 647 (103124; BioLegend), CD326 (EpCAM)-Alexa Fluor 488 (118212; BioLegend), CD31-Alexa Fluor 647 (102416; BioLegend), and PDPN-APC/Cy7 (127418; BioLegend) and for 15 min with DAPI. DAPI/CD45/CD31/PDPN EpCAM+ cells were sorted on the FACSAria cell sorter (BD) and processed for PCR-based genotyping of Trp53 1loxP.
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2

Sorting and Analyzing Cancer Cells and CAFs

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For sorting of cancer cells and CAFs, KPC tumors were processed as previously described (19 (link)). Cells were stained with anti-mouse CD45-AlexaFluor 647 (103124, BioLegend), CD326 (Ep-CAM)-AlexaFluor 488 (118212, BioLegend), CD31-AlexaFluor 647 (102416, Biolegend), CD140a (PDGFRα)-PE (135905, BioLegend), PDPN-APC/Cy7 (127418, Biolegend) and DAPI for 15 min. Cells were sorted on the FACSAria cell sorter (BD) for DAPI/CD45/CD31- EpCAM+ and DAPI/CD45/CD31/EpCAM- PDPN+ cell populations. For flow cytometry analysis of EdU-treated KPC tumors, KPC mice were administered 300 μg 5-Ethynyl-2-deoxyuridine (EdU) (61135-33-9, Santa Cruz) formulated in sterile saline twice a day for 3 days via intraperitoneal injection. EdU was detected using Click-iT™ Plus EdU Alexa Fluor™ 647 Flow Cytometry Assay Kit (C10634, Thermo Fisher Scientific). For flow cytometric analysis of IL-1R1 and myCAF/iCAF populations, antibodies employed were: anti-mouse CD31-PE/Cy7 (102418, Biolegend), CD45-PerCP/Cy5.5 (103132, Biolegend), CD326 (Ep-CAM)-AlexaFluor 488, PDPN-APC/Cy7, CD140a (PDGFRα)-PE, Ly6C-APC (128015, Biolegend), biotinylated CD121a (IL-1R, Type I/p80) (113503, Biolegend) and APC Streptavidin (405207, Biolegend).
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3

Multiparameter Flow Cytometry Analysis of Cell Populations

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The antibodies used in this study include PE anti-mouse CD24 (BioLegend; 101 808; 1 : 200), PE/Cy7 anti-mouse/human CD44 (BioLegend; 103 030; 1 : 100), FVD (Invitrogen Firable Viability Dye660; 65–0864-14; 1 : 500), Alexa Fluor 647 anti-mouse CD45 (BioLegend; 103 124; 1 : 1000), DAPI (Beyotime; C1006), β-actin (Beyotime; AA128–1; 1 : 5000), goat anti-mouse IgG (H + L) (MULTISCIENCES (LIANKE) BIOTECH, CO., LTD; GAM007; 1:300), anti-rabbit IgG (Cell Signaling Technology; 7074S; 1 : 300), GAPDH (Proteintech; HRP-60004; 1 : 10000), PCNA (Cell Signaling Technology; 2586 T; 1 : 2000), MTT (Beyotime; ST1537-1 g), BeyoClick EdU Cell Proliferation kit with Alexa Fluor 488 (Beyotime; C0071S), bromo-deoxyuridine (BrdU) (BD Pharmingen; 555 627; 1 : 300), Yes1-associated transcriptional regulator (YAP1) (Thermo; RF2213666; 1 : 300), Phalloidin (Beyotime; C2201S 1:300)
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4

Splenocyte Immunophenotyping by Flow Cytometry

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Freshly prepared splenocytes were incubated in mouse Fc block (Rat anti-mouse CD16/32, BD Biosciences, catalog # 553142, 1:100) for 5 mins followed by incubation in antibodies for pan-leukocytes (Alexa Fluor 647 anti-mouse CD45, BioLegend, catalog # 103124, 1:100), B cells (PE-Cy7 Rat anti-mouse CD45R/B220, BD Biosciences, catalog # 552772, 1:100), and T cells (BV605 anti-mouse CD3, BioLegend, catalog # 100237, 1:100) in dark at 4°C for 30–45 mins, washed with PBS containing 2% FBS. Cells were stored on ice until analyzed using cytometer (CYTEK Northern Lights 3000, Fremont, CA).
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