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Western Blot and ELISA Analysis of Retinal Proteins

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For the western blot analysis, the neural retinas were rapidly dissected from the euthanatized rats and lysed in RIPA buffer (Beyotime, Shanghai, China) containing a protease inhibitor (Beyotime, Shanghai, China) and phosphatase inhibitor (Roche, Mannheim, Germany). Aliquots containing 30 μg of protein were separated by SDS-polyacrylamide gel electrophoresis using a 10% gel, and the separated proteins were blotted onto PVDF membranes (Millipore, Billerica, MA) in a wet transfer unit (Bio-Rad, Hercules, CA). After blocking with 5% non-fat dry milk at room temperature for 1 h, the membranes were incubated overnight at 4°C with the following primary antibodies: GPR91 (1:1000), p-ERK1/2 (1:3000) , t-ERK1/2 (1:3000) , COX-2 (1:200), anti-VEGF (1:200, Abcam, Cambridge, MA) andβ-actin (1:1000, Abcam). After being washed with TBS-Tween 20, the membranes were incubated with the appropriate HRP-conjugated secondary antibodies (1:1000, ProteinTech Group, Chicago, IL) for 1 h at room temperature. The bands were visualized using an enhanced ECL detection kit (Pierce Biothechnology, Rockford, IL). For the ELISA, the vitreous fluid samples were collected from rat eye for enzyme-linked immunosorbent assay analysis using kits from R&D Systems (Minneapolis, MN) following the instructions provided by the manufacturer.
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2

Brucea javanica Seed Extract Anticancer Effects

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Brucea javanica seeds were purchased from the Bozhou Chinese herbal medicine market. BD was extracted from the seeds of Brucea javanica (Supplementary Information). Cell Counting Kit-8 (CCK-8; CK04–500, Dojindo, Kumamoto, Japan), 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA, Sigma), an Annexin V-FITC/propidium iodide (PI) kit (BD Biosciences, San Jose, CA), cisplatin (CDDP, Sigma-Aldrich, St. Louis, MO), dimethyl sulfoxide (DMSO, Solarbio, China), carbonyl cyanide 3-chlorophenylhydrazone (CCCP, Beyotime, China), N-acetylcysteine (NAC, Sigma), acridine orange (AO, Solarbio, China), and 5-ethynyl-2′-deoxyuridine (EdU, Beyotime, China) were purchased from the indicated suppliers. Primary antibodies for Bax, Bcl-2, caspase-9, cleaved caspase-9, caspase-3, cleaved caspase-3, cytochrome c, COX4, and GAPDH were purchased from Proteintech Group (Wuhan, China). Akt, p-Akt, p-ERK1/2, JNK, p-JNK, and β-actin antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX). t-ERK1/2, p38, p-p38, p62, LC3, and Atg7 antibodies were purchased from Abcam, and the PARP antibody was purchased from Cell Signaling Technology (Beverly, MA).
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Western Blot Analysis of CRISPR-Induced Protein Targets

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Protein was collected and quantified at 48 h after transfection of the CRISPR plasmid. Same amount of total proteins were loaded to the sodium dodecyl sulfate–polyacrylamide gel electrophoresis. The primary antibodies against HPV16-E7 (1:1000; Biorbyt, Shanghai, China), retinoblastoma (RB; 1:800; Proteintech, Rosemont, IL), cyclin-dependent kinase 2 (CDK2; 1:500; Proteintech), E2F transcription factor 1 (E2F1; 1:1000; Proteintech), total-Akt (t-Akt; 1:800; Abcam, Shanghai, China), phosphorylated Akt (p-Akt; 1:800; Abcam), total extracellular signal-regulated kinase 1/2 (t-ERK1/2; 1:500; Abcam), or phosphorylated-ERK1/2 (p-ERK1/2; 1:500; Abcam), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 1:2000; Proteintech) were used. Then, blots were incubated with horseradish-peroxidase-conjugated secondary antibodies, and the bands were visualized using chemiluminescence. The experiments were repeated at least 3 times.
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