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Axiom 600 k genome wide chicken array kit

Manufactured by Thermo Fisher Scientific
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Sourced in United States

The Axiom 600 K Genome-Wide Chicken Array Kit is a high-density genotyping array designed for whole-genome analysis of chickens. It provides comprehensive genomic coverage with approximately 600,000 genetic markers, enabling researchers to conduct a wide range of genetic studies, including genome-wide association studies, genomic selection, and population genetics analyses.

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Lab products found in correlation

Whatman fta card, by GE Healthcare (1 mentions) Whatman, by Cytiva (1 mentions)

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Axiom array (59 citations)

2 protocols using axiom 600 k genome wide chicken array kit

1

Genotyping of Chicken Samples from FTA Cards

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Genomic DNA was extracted from blood preserved on Whatman FTA cards (GE Healthcare, Chicago, IL, USA, CAT#WB120401). A total of 526 individuals that met concentration and DNA quality requirements were genotyped on the Axiom 600 K Genome-Wide Chicken Array Kit (Affymetrix, Santa Clara, CA, USA, CAT#902148) by Geneseek (Lincoln, NE, USA). SNPs were then filtered for a call rate greater than 95% and minor allele frequency of greater than 0.01. After quality filtering, 304,500 SNPs were used in the downstream analysis from 526 individuals. SNP positions were mapped to the galGal 5 reference genome.
Saelao P., Wang Y., Chanthavixay G., Gallardo R.A., Wolc A., Dekkers J.C., Lamont S.J., Kelly T, & Zhou H. (2019). Genetics and Genomic Regions Affecting Response to Newcastle Disease Virus Infection under Heat Stress in Layer Chickens. Genes, 10(1), 61.
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2

Genotyping of Chicken Genome

Cited 1 time
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Genotyping was performed using the same methodology as previously described [23 (link)]. Genomic DNA was extracted from chicken blood and genotyped on the Axiom® 600K Genome-Wide Chicken Array Kit (Affymetrix CAT#902148) by Geneseek (Lincoln, NE, USA). After the filtration of SNPs based on a call rate greater than 95% and a minor allele frequency of greater than 0.01, genotypes for 304,500 SNPs on 526 individuals were used in the downstream analysis. SNP positions were mapped to the genome based on the galGal 6 reference genome.
Wang Y., Saelao P., Chanthavixay G., Gallardo R.A., Wolc A., Fulton J.E., Dekkers J.M., Lamont S.J., Kelly T.R, & Zhou H. (2024). Genomic Regions and Candidate Genes Affecting Response to Heat Stress with Newcastle Virus Infection in Commercial Layer Chicks Using Chicken 600K Single Nucleotide Polymorphism Array. International Journal of Molecular Sciences, 25(5), 2640.
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