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Hplc labsolution

Manufactured by Shimadzu
Sourced in Japan

HPLC LabSolution is a data processing software developed by Shimadzu Corporation. It is designed to provide a user-friendly interface for controlling and managing high-performance liquid chromatography (HPLC) systems.

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3 protocols using hplc labsolution

1

Synthesis and Purification of SHLP Peptides

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Small humanin-like peptide 1 to 6 (SHLP1-6) were purchased from AnyGen [http://www.anygen.com/eng/]. For each peptide, the Fmoc-Ser (tBu)-Wang resin was allowed to swell in dimethylformamide (DMF). The amino acid was then deprotected using a solution of 20% piperidine in DMF. Coupling was carried out using Hexafluorophosphate Benzotriazole Tetramethyl Uronium (HBTU), N-methylmorpholine (NMM) in DMF. Stepwise deprotection and coupling of amino acids was repeated until the desired peptides was synthesized. The peptides were cleaved from dried resin using a trifluoroacetic acid (TFA) solution containing 2.5% 1, 2 ethanedithiol (EDT), 5% thioanisole and 5% distilled water. Crude peptides were precipitated in ether, and dried under vacumm. Peptides were purified using commercial columns (YMC-Triart C18/S-5 μm/12 nm.5μm (20 x 250 mm) and each fraction was obtained at a flow rate of 1 mL/min. The collected fractions were analyzed via HPLC (Shimadzu HPLC LabSolution) and MALDI-TOF MS (AXIMA Assurance, Shimadzu). The fractions containing the pure peptide were mixed and then lyophilized. SHLP2 were freshly prepared at 1 µg/µL by diluting in saline, and were freshly used for mice. The information of SHLP peptide sequence used in study were listed in Supplementary Table 3.
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2

Synthesis and Purification of eMTDΔ4 Peptide

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eMTDΔ4 peptide was synthesized and purified using high‐performance liquid chromatography (HPLC) at AnyGen (Gwangju, South Korea). Briefly, the Fmoc‐Phe‐wang resin was swelled with DMF for 30 min, washed twice with DMF, and then Fmoc was removed with 20% piperidine/DMF twice, followed by washing six times with DMF. For the next Fmoc‐A.A‐OH coupling, a solution of Fmoc‐A. A‐OH was added to HBTU and NMm in DMF and reacted for 1 h. The resin was washed three times with DMF, and then Fmoc was removed twice with 20% piperidine/DMF, followed by washing six times with DMF. These coupling and washing steps were repeated to synthesize eMTDΔ4. The crude synthesized eMTDΔ4 peptide was further purified using an HPLC system (Shimadzu HPLC Lab Solution, Tokyo, Japan) and SHIMADZU C18 analytical column (5 mm, 20 × 250 mm), and the final synthesized eMTDΔ4 peptide (> purity 95%) was lyophilized. The peptides were dissolved in distilled water and stored at −20°C. The peptide sequences are listed in Table S1.
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3

Designing a Novel Antimicrobial Peptide

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The transcriptome database of O. minor was screened for AMPs, and the prohibitin-2 cDNA sequence was considered a candidate for designing a novel AMP. The prohibitin-2 cDNA sequence was submitted to the National Center for Biotechnology Information (NCBI) (https://www.ncbi.nlm.nih.gov/, accessed on 7 January 2022) database with accession number MW939430. To design octoprohibitin, the C-terminal region of the prohibitin-2 AA sequence was selected as a template. The novel AMP, octoprohibitin (WRVCKQSEKVILNPFWKKKKKKKFRV), which contains 26 AA residues, was synthesized by a solid-phase peptide synthesis technique (AnyGen Co., Gwangju, Korea), and purified by reverse-phase high-performance liquid chromatography using a SHIMADZU C18 analytical column (Shimadzu HPLC LabSolution, Kyoto, Japan). Mass analysis was conducted using linear MALDI-TOF mass spectrometry (AXIMA Assurance, MALDI-TOF; Shimadzu, Kyoto, Japan). The three-dimensional structure of octoprohibitin was generated using APPTEST (https://research.timmons.eu/apptest, accessed on 7 January 2022), and the images were visualized using Discovery Studio Visualizer (Version 21.1.0.20298, Biovia, CA, USA). The helical wheel projection of octoprohibitin was derived by Netwheel, Peptides Helical Wheel, and Net projection maker (http://lbqp.unb.br/etWheels/, accessed on 7 January 2022) [18 (link)].
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