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4 protocols using reduced glutathione

1

Purification of HFGF-CD59 from HEK293 Cells

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For purification of HFGF-CD59, approximately 1 × 108 HEK293, HEK293-B3GALT4 KO and HEK293-B3GALT4-PIGZ DKO cells stably expressing HFGF-CD59 were treated with 0.5 unit/mL PI-PLC (Thermo Scientific) in 5 mL of PI-PLC buffer (Opti-MEM containing 10 mM HEPES-NaOH (pH 7.4), 1 mM EDTA and 0.1% BSA (Nacalai Tesque) at 37 °C for 2.5 h. HFGF-CD59 was also prepared from vector- or 3HA-B3GALT4-transfected HEK293-B3GALT4-PIGZ DKO cells. Supernatants were loaded on the columns filled with 0.25 mL of Glutathione Sepharose 4B (GE healthcare) at 4 °C. After washing with 5 mL PBS, HFGF-CD59 was eluted by 5 mL elution-buffer A (PBS containing 30 mM HEPES-NaOH (pH 7.4) and 20 mM reduced glutathione (Wako)). 100% cold trichloroacetic acid (Wako) was added to eluted samples to final 10 % followed by incubation on ice for 30 min. Proteins were precipitated by centrifugation at 12,000 × g for 15 min at 4 °C. After twice washing with 100 % cold ethanol, pellets were resolved in 1 × SDS-sample buffer with 5% β-mercaptoethanol and boiled at 60 °C for 1 h. Samples were subjected to SDS-PAGE, Coomassie brilliant blue staining (Imperial Protein Stain, Thermo Scientific), and in-gel digestion with trypsin.
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2

Tissue Clearing and Reductive Screening

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Tissue clearing was performed as described by Kurihara et al. (2015) (link) with slightly modifications. ClearSee solutions were prepared by mixing xylitol powder [10% (w/v) final concentration; Wako, Osaka, Japan, 248-00545], sodium deoxycholate [15% (w/v) final concentration; Tokyo Chemical Industry, Tokyo, Japan, C0316] and urea [25% (w/v) final concentration; Wako, 211-01213] in water. The following reductants (50 mM final concentration) were used for screening: reduced glutathione (Wako, 071-02014); 1-thioglycerol (Nacalai Tesque, Kyoto, Japan, 33709-62); 2-mercaptoethanol (Wako, 131-14572); 1,4-dithiothreitol (Wako, 048-29224); 2-aminoethanethiol hydrochloride (Nacalai Tesque, 21419-32); and sodium sulfite (Wako, 190-03411). The leaves were fixed in 4% (w/v) PFA (Wako, 162-16065) for 120 min in PBS under vacuum (690 mmHg) at room temperature. Fixed tissues were washed twice for 1 min in PBS and cleared with modified ClearSee at room temperature or 4°C until clearing.
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3

Synthesis and Procurement of Uremic Toxins

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Indoxyl sulfate was purchased from Biosynth (Staad, Switzerland). Phenyl sulfate and p-cresyl sulfate were synthesized at Eiweiss (Shizuoka, Japan). Indoleacetic acid was purchased from Tokyo chemical industry (Tokyo, Japan). Hydrogen peroxide and reduced glutathione were purchased from Wako Pure Chemical Industries (Osaka, Japan). Buthionine sulfoximine was purchased from Cayman Chemical (Ann Arbor, MI, USA). Meta-phosphoric acid was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Synthesis of Novel Organic Compounds

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Sodium chloride (NaCl), lysozyme, monosodium phosphate (NaH2PO4), imidazole, glycerol, reduced glutathione, oxidized glutathione, methanol, dimethyl sulfoxide (DMSO), trifluoroacetic acid (TFA), tert-butyl acetate, perchloric acid (HClO4), hydrochloric acid (HCl), sodium carbonate, ethyl acetate, sodium sulfate, hexane, sodium hydrogen carbonate (NaHCO3), acetone, triphenyl phosphine (Ph3P), anhydrous dichloromethane (CH2Cl2), and anhydrous tetrahydrofuran (THF) were purchased from Wako Pure Chemical Industries Ltd. (Osaka, Japan). 3-Bromo-tyrosine, 3-hydroxymethyl-2-methylbiphenyl, and diisopropyl azodicarboxylate (DIAD; 40% in toluene, approximately 1.9 mol L−1) were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Magnesium sulfate and CH2Cl2 were purchased from Junsei Chemical Co., Ltd. (Tokyo, Japan). Deuterochloroform (CDCl3) was purchased from Isotec, Inc. (Miamisburg, OH, USA), and N-[(9H-fluoren-9-ylmethoxy) carbonyloxy] succinimide (Fmoc-Osu) was purchased from Watanabe Chemical Industries, Ltd. (Hiroshima, Japan).
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