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Sre0045

Manufactured by Merck Group

The SRE0045 is a laboratory equipment product manufactured by Merck Group. It is a general-purpose device designed for use in scientific research and analysis. The core function of the SRE0045 is to perform specific tasks related to laboratory procedures, but a detailed description cannot be provided while maintaining an unbiased and factual approach.

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6 protocols using sre0045

1

HSPA8 Luciferase Refolding Assay

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In vitro luciferase refolding assay as described previously (31 (link)) was adapted for measuring HSPA8 refolding activity. Briefly, recombinant HSPA8 protein (400 ng) (catalog #NBP1-30278; Novus) was incubated with GST or NogoA-213 (400 ng) at 37 °C for 15 min. Firefly luciferase (2 × 108 U) (catalog #SRE0045; Merck) in refolding buffer (25 mM Tris–HCl pH7.6, 50 mM KCl, 10 mM MgCl2, 5 mM DTT, 2.5 mM ATP) was heat denatured at 45 °C for 7 min. Denatured luciferase was mixed with HSPA8/GST or HSPA8/NogoA-213 and incubated on ice for 10 min, then the mixture was incubated at 30 °C for the indicated time points. To determine the luciferase activity, 2 μl sample was transferred to 20 μl luciferin (1 mM) (catalog #L9504; Merck) and luminescence was measured by luminometer (infinite M200, TECAN).
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2

ChIP-seq and Luciferase Assays for KIF4A

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ChIP assays were performed using a commercial kit, the ChIP assay kit (ab500; Abcam). A total number of 108 T24 cells were crosslinked, resuspended and lysed with RIPA buffer (R0278; Sigma-Aldrich; Merck KGaA), then sonicated so as to shear the DNA into a range of 500-1,000 bp. Chromatin fraction was then immunoprecipitated by the use of KIF4A or IgG (ab172730; Abcam, 1:200 dilution) antibodies at 4°C for 6 h, respectively, and the mix was enriched by the use of protein A Agarose (5015979001; Roche Diagnostics). Beads were isolated and washed with PBS 5 times. DNA was finally purified and RT-qPCR assays were performed as described above.
For luciferase assays, T24 cells were maintained and transfected with 1 μg pGL-CDCA3, pGL-CDCA1, pGL-CDCA8, pGL-Basic pEnter-KIF4A overexpression plasmids overnight by 5 μl Lipofectamine®. The luciferase reporter plasmid was bought from Merck (SRE0045). At 1 day following transfection, the cells were washed with PBS twice and lysed with RIPA (R0278; Sigma-Aldrich; Merck KGaA), and the luciferase activities were detected by the use of a luciferase assay kit (ab253393; Abcam). The normalization was performed by comparison with Renilla luciferase activity.
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3

Bioluminescence Assay for Coenzyme A

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Coenzyme A (Sigma #C3019), D-luciferin (Cayman #Cay25836), luciferase (Sigma #SRE0045), HRP (Peroxidase from horseradish, Type II, Sigma #P8250-5KU), HVA (Homovanillic acid, Sigma #H1252). Other chemicals were obtained from Sigma-Aldrich unless stated otherwise.
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4

Luciferase Protein Infiltration and P. syringae Infection Assay

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Plant leaves were incubated with 100 μg ml−1 luciferase (Sigma, SRE0045) protein solution for 1 h at room temperature, followed by addition of a P. syringae suspension (OD600 = 0.2), which was then incubated for 30 min in 23 °C under light before washing three times with sterile ddH2O. Subsequently, samples were treated with a flash assay buffer containing 20 mM Tricine, 3 mM MgSO4, 0.1 mM EDTA, 2 mM dithiothreitol, and 500 μM D-luciferin (Sigma, L6882), and fluorescence was monitored using a Zeiss Axiovert 200 M with Leica DFC290 color camera and DFC340 monochrome camera.
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5

Hippocampal Luciferase Aggregation Assay

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Hippocampus were analyzed for luciferase aggregation prevention capacity as previously described (Adelöf et al., 2018). Specifically, right hippocampi were manually grinded in Eppendorf tubes and lysed in extraction buffer (25 mM Tris/HCl pH 7.8, 100 mM NaCl, 5 mM MgCl2, 1 mM ATP, 1 mM AEBSF, and 5% glycerol), and cell debris was removed by centrifugation at 5000 g for 10 min followed by addition of 1 mM DTT after an aliquot was taken for protein concentration determination with the BCA Protein Assay kit (Pierce, Thermo Fisher Scientific). luciferase (200 nM; SRE0045, Sigma‐Aldrich) was denatured at 42°C in 50 mM Tris (pH 7.6) and 2 mM EDTA, in the presence of 5 µg hippocampal protein extracts (4.5 µg for females 7 months) and aggregation of luciferase was measured as light scattering at 340 nm. Sample wells without protein extract were used as positive control (reference indicating maximum aggregation). Protein samples without luciferase were used as negative control of aggregation and extraction buffer only was considered background, neither of these controls changed over time. The chosen timepoint for analysis was when the positive control (without protein extract) had reached 60%–80% of maximum aggregation. The luciferase aggregation prevention capacity of the hippocampus extracts was calculated as percent non‐aggregated luciferase.
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6

Luciferase Plug Composition for In Vivo Imaging

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The following optimized composition of the luciferase plug was used for the experiments: 83 μL of Matrigel® matrix, 10 μg of luciferase enzyme (1 × 1011 units per mg, Sigma-Aldrich SRE0045), 10 mM ATP, 1 mM Mg2+ and PBS up to a 100 μL total volume. ATP, Mg2+, luciferase and PBS were first premixed in an Eppendorf tube, followed by the addition of ice-cold Matrigel® matrix. The concentrations of stock solution were as follows: ATP – 100 mM, Mg2+ −0.5 M and luciferase - 10 μg/μL. Typically, 1.2 mL of plug solution was prepared and stored at −20 °C until use and 100 μL of the plug solution was used for each mouse injection and experiments in human cadaver. Subcutaneous injection was performed using 1 mL syringe. The size of the plug post injection was ~7 × 7 mm. 500 μL of the plug solution was used for experiments in dogs.
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