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Ow cytometer

Manufactured by BD
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A flow cytometer is an instrument used to analyze the physical and chemical characteristics of particles or cells in a fluid as they pass through a beam of light. It can measure multiple parameters of individual cells simultaneously, including size, internal complexity, and fluorescence intensity.

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94 protocols using ow cytometer

1

Apoptosis and Cell Cycle Analysis

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For the analysis of cell apoptosis, Annexin V-uorescein isothiocyanate (FITC)/propidium iodide (PI) Apoptosis Detection Kit (Beyotime) was used. After 48 h of transfection, SW480 and SW620 cells were harvested and stained with 5 μL AnnexinV-FITC (Beyotime) and 10 μL PI (Beyotime) for 15 min in the dark. Next, a ow cytometer (BD Biosciences, San Jose, CA, USA) was adopted to examine the percentage of apoptotic cells.
For the analysis of cell cycle, transfected SW480 and SW620 cells were collected, washed in PBS (Solarbio) and xed in 70% ethanol overnight at 4°C. Then the ethanol was removed, cells were washed again and resuspended in PI (Beyotime) containing RNase (Solarbio) for 30 min at room temperature followed by detection with a ow cytometer (BD Biosciences).
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2

Mitochondrial Membrane Potential Evaluation

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Alterations in mitochondrial membrane potential were measured by ow cytometry using the JC-1 kit (KeyGEN, Nanjing, Jiangsu, China) according to the manufacturer's instructions. Brie y, after 48 hours' transfection of CCSC with Nanog siRNA or negative siRNA control, the cells were harvested and washed twice with PBS and re-suspended in 500 µl incubation buffer containing the JC-1 dye (1 µl) at a density of 1×10 6 cells/ml. After being incubated for 15 min at 37°C, 5% CO 2 , the cells were collected and washed twice with the incubation buffer. Subsequently, cells were re-suspended in 500 µl incubation buffer and analyzed using a ow cytometer (BD Biosciences, USA).
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3

Cell Cycle and Apoptosis Assays

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For the cell cycle assay, after LIPUS or sham irradiation treatment, cell-laden GelMA scaffolds were cut into small pieces and lysed using GelMA Lysis Buffer (EFL-GM-LS-001, SuZhou, China), harvested, and xed with pre-cooled 75% ethanol at 4 °C overnight. After centrifugation, the cells were incubated with PI and RNase A at 37 °C for 30 min in the dark. The cell cycle stages were analyzed at an excitation wavelength of 488 nm using ow cytometry (BD Biosciences, San Jose, USA) and the data were analyzed using FlowJo software (TreeStar, Ashland, OR, USA).
Apoptosis of H9C2 cells was determined using an FITC Annexin V and PI double staining kit (Servicebio, Wuhan, China). After different treatments, the cells were collected, resuspended, and incubated with 5 µL of Annexin V and 5 µL of PI. After incubation for 20 min in the dark at room temperature, the cells were stained for 15 min, and a ow cytometer (BD Biosciences, San Jose, USA) was used to detect apoptosis. The data were analyzed using FlowJo software (TreeStar, Ashland, OR, USA).
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4

Cell Viability and Apoptosis Evaluation

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Cell Counting Analysis Kit (CCK-8, Beyotime, China) for cell viability detection was performed according to the manufacturer's instructions. Brie y RAW 264.7 cells were seeded in a 96-well plate at a density of 5×10 3 /well . After 24h, the medium was replaced with fresh α-MEM medium containing AGEs at concentrations of 0, 100, 200, 400 mg/L for 12, 24, 36, and 48 h. Then, after the supernatant was discarded and cells were washed with PBS twice, 10μL CCK-8 solution was added to each well and cultured at 37 °C for 3 h. The absorbance was measured by enzyme labeling instrument (PerkinElmer, USA) at 450 nm wavelength.
An Annexin V-FITC apoptosis assay kit (Beyotime, China) was used to estimate the apoptosis rate of RAW264.7 cells. Brie y, cells in logarithmic growth phase were inoculated in 6-well plates and cultured for 24 h. Then the medium was replaced with fresh α-MEM medium containing AGEs at concentrations of 0, 100, 200, 400 mg/L for 24 h. After washed with PBS twice, cells were stained with Annexin V-FITC and propidium iodide (PI) in binding buffer at 4˚C. Samples were detected with ow cytometer (BD In ux, USA) and the results were statistically analyzed by FlowJo 7.6.1.
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5

Inhibiting Endocytic Pathways in DCs

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For further exploring the endocytic pathways of DCs to NaVs, we used several uptake inhibitors to pretreat cells separately to block the corresponding endocytic pathway. Brie y, BMDCs were co-cultured with fucoidan (FCD, 10 µg/mL), chlorpromazine (CPM, 10 µg/mL) or methyl-β-cyclodextrin (MBCD, 10 µg/mL) for 1 hour, respectively. Afterwards, the pretreated cells were co-incubated with free FITC-OVA or NaVs (containing FITC-OVA) for hours while untreated cells were used as negative control. Then the quantity of FITC-OVA in BMDCs was detected using a ow cytometer (BD Biosciences, CA, USA) and the reduction of antigens uptake of NaVs compared to negative control group was calculated.
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6

Measurement of Cellular Oxidative Stress

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ROS and mitochondrial ROS (mitoROS) levels were measured using a Reactive Oxygen Species Assay Kit (Beyotime, China) and MitoSOX Red reagent (Invitrogen, USA), respectively, according to the manufacturer's instructions. Brie y, 2 × 10 5 KFb were seeded into 6-well plates and cultured in complete culture medium containing different concentrations of LY294002 (0, 5, and 25 µM) in incubators under hypoxia or normoxia at 37°C for 24 h. For ROS detection, KFb were harvested with 0.25% trypsin and incubated with 10 µM DCFH-DA working solution for 20 min at 37°C in the dark. For mitoROS investigation, cells were incubated in 1 ml of 5 µM MitoSOX reagent working solution at 37°C in the dark. The cells were then washed twice with DMEM without FBS to remove the working solution that did not enter the cells. Finally, the uorescence intensity was assessed using a ow cytometer (BD, USA).
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7

Annexin V Apoptosis Analysis

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Annexin V analysis was performed using the -Annexin V-FITC kit (KeyGEN, Nanjing, Jiangsu, China) according to the manufacturer's instructions. Brie y, after 48 hours' transfection of CCSC with Nanog siRNA or negative siRNA control, they were harvested and washed twice with PBS and then re-suspended in binding buffer at a density of 1×10 6 cells/ml. Subsequently, Annexin V-FITC (5µl) and propidium iodide (PI) (5µl) were added to the cells (500 µl). After being incubated for 15 min in the dark at RT, the cells were analyzed using a ow cytometer (BD Biosciences, USA). Annexin V -/PI -cells present cell survival, Annexin V + /PI -cells were shown cells in early apoptosis, and Annexin V + /PI + cells were in late apoptosis or necrotic. The experiments were repeated independently three times.
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8

Apoptosis and Cell Cycle Analysis

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Cells were harvested after speci c treatment, washed with ice-cold PBS for 3 times, and stained with annexin V-uorescein isothiocyanate (FITC) apoptosis detection kits (KeyGEN Biotech, Nanjing, China). Cell apoptosis was analyzed in a ow cytometer (BD Biosciences).
After trypsinization, AGS cells were washed with cold PBS. Cells were participated and cold ethanol (75%) was used to dissolve the cells, followed by incubation at 4 °C for 4 h. Cells were washed with cold PBS three times. After washing, cells were stained with BD Pharmingen™ PI/RNase for 30 min at 25 °C, followed by ow cytometer at different cell cycle phases (G1, S, and G2).
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9

Annexin V Apoptosis Quantification

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Annexin V apoptosis detection kits (Bio-Vision, SF) was used to quantify cells apoptosis according to the manufacturer's instruction. Cells were stained with FITC-conjugated annexin-V in the dark at room temperature and were suspended in a 1X binding buffer. Cells were measured by a ow cytometer (BD Biosciences).
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10

Flow Cytometry for Apoptosis and Cell Cycle

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Flow cytometry was used for detection of apoptosis and cell cycle.
The cells were collected, and incubated with Annextin V-FITC reagent and propidium iodide at room temperature for 20 min in the dark. Then the cells were detected by ow cytometer (BD, Franklin Lakers, NJ, USA).
For cell cycle detection, the cells were collected and immobilized with 70% ethanol at 4 ℃ overnight. Then the cells were incubated with PI/RNaseA buffer at room temperature for 60 min in the dark, and used for detection by ow cytometer.
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