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Tsq vantage triple quadrupole qqq mass spectrometer

Manufactured by Thermo Fisher Scientific
Sourced in Denmark

The TSQ Vantage triple quadrupole (QQQ) mass spectrometer is a high-performance analytical instrument designed for sensitive and selective detection and quantification of target analytes in complex matrices. It utilizes triple quadrupole technology to provide accurate and reliable results.

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4 protocols using tsq vantage triple quadrupole qqq mass spectrometer

1

Plasma Glycopeptide Profiling via SRM-MS

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All SRM analyses were performed on
a TSQ Vantage triple quadrupole (QQQ) mass spectrometer (Thermo Scientific)
at the University of Washington Proteomics Resource. The mass spectrometer
was coupled to a nanoelectrospray ionization source and a Waters nanoACQUITY
UPLC system. Glycopeptides from 1 μL of original plasma (∼1
μg peptides) were loaded onto a C18 trap column (20 mm long,
75 μm ID) and separated by a 150 mm C18 column (75 μm
ID) over a 60 min 2–35% linear acetonitrile gradient. Spray
voltage was set at 1700 V. Scheduled SRM was performed with 5 min
retention time windows for most of the peptides and an instrument
cycle time of 2000 ± 500 ms. Dwell times were varied depending
on the number of concurrent transitions; in all cases they were at
least 10 ms.
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2

Liquid Chromatography-Mass Spectrometry Protocol

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The liquid chromatography (LC)-MS system consisted of a Proxeon EASY nano-LC (Proxeon, Odense, Denmark) coupled to a TSQ-Vantage triple quadrupole (QQQ) mass spectrometer (Thermo Fisher Scientific, Waltham, MA). The LC was C18-based reverse phase separation with a 2-cm trap column and a 10-cm analytical column (EASY column, Thermo). Columns were equilibrated with 100% buffer A and peptides were eluted with a 40 min linear gradient of buffer A and buffer B (AcN, 5% H2O, 0.1% HCOOH), until 40% B was reached. MS raw data files were imported into Skyline and each file was quality checked by visual inspection of retention time and ranking of transitions for each peptide. A more detail description can be found in the Data S1.
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3

Quantitative Plasma Glycopeptide Analysis

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All SRM analyses were performed on a TSQ Vantage triple quadrupole (QQQ) mass spectrometer (Thermo Scientific) at the University of Washington Proteomics Resource. The mass spectrometer was coupled to a nano-electrospray ionization source and a Waters nanoACQUITY UPLC system. Glycopeptides from 1 μl original plasma (~ 1 μg peptides) were loaded onto a C18 trap column (20 mm long, 75μm ID) and separated by a 150 mm C18 column (75μm ID) over a 60-min 2-35% linear acetonitrile gradient. Spray voltage was set at 1700 V. Scheduled SRM were performed with 5-min retention time windows for most of the peptides and an instrument cycle time of 2000 ± 500ms. Dwell times were varied depending on the number of concurrent transitions; in all cases they were at least 10 ms.
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4

Pentazoles Fragmentation Analysis by MS/MS

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All reagents and solvents were purchased from Aladdin and Energy Chemical as analytical grade and used without further purification. All experiments used deionized water with a resistivity of 18.2 MΩ.
For the cleavage experiments, these pentazoles reaction liquid were dissolved in CH3OH, and infused into the spectrometer’s ion source at 10 μL·min−1 with a syringe pump. In tandem mass spectrometry (MS/MS) experiments, the desired negative-ion or positive-ion peaks are mass-selected and subjected to product ion mass analysis following collision-induced dissociation (CID) at variable collision voltages using N2 as the collision gas.
Mass spectrometric ionization was carried out in electrospray ionization source (ESI) ionization mode with a source temperature of 250 °C. The detection was carried out on a TSQ Vantage triple quadrupole (QqQ) mass spectrometer (Thermo Fisher Scientific), equipped with an ESI turbo spray ionization source. The entire system was controlled via Xcalibur 2.2 software and data were processed using TraceFinder 3.1.
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