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1 458 protocols using ab8245

1

Protein Expression Analysis in HPAEpiCs and Lung Tissues

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The total proteins were extracted from HPAEpiCs or lung tissues by using lysis buffer (P0013G, Beyotime, China), and the protein concentration in each extract was determined using a Bradford protein assay kit (ab102535, Abcam, Cambridge, UK. Next, a 20 ug sample of total protein from each extract was separated by SDS-PAGE (10%; Beyotime), and the protein bands were transferred onto PVDF membranes (Millipore, Billerica, MA, USA), which were subsequently incubated overnight at 4°C with the following antibodies: anti-LC3B (1 : 1000, ab51520, Abcam, Cambridge, MA, USA), P62 (1 : 1000, ab91526, Abcam), Beclin-1 (1 : 1000, ab207612, Abcam), SLUG (1 : 1000, ab51772, Abcam), HIF-1α (1 : 500, ab92498, Abcam), E-cadherin (1 : 500, ab40772, Abcam), N-cadherin (1 : 1000, ab202030, Abcam), and GAPDH (1 : 10000, ab8245, Abcam). Next, the membranes were incubated with an HRP goat anti-rabbit/mouse IgG secondary antibody (1 : 20000, ab8245, Abcam); after which, the immunostained protein bands were detected using an enhanced chemiluminescence detection system (Millipore). The integral optical density values of the protein bands were analyzed using Image Pro Plus 6.0 software.
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2

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cultured cells and quantified using Trizol reagent (Invitrogen) following the protocols. Equal amounts of protein from different cells were separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA). The membrane was blocked with 5% non-fat milk and incubated with antibodies against MHC-ІІ (ab55152, Abcam), IL-1β (#12242, CST), CD206 (ab64693, Abcam), Arg-1 (#9819, CST), GAPDH (ab8245, Abcam), CEBPA (ab40764, Abcam), and β-actin (ab8245, Abcam) at the concentration of 1:1000 at 4°C overnight. The blots were then incubated with horseradish peroxidase–conjugated secondary antibodies in blocking buffer at room temperature for 2 h. The signal was detected using ECL system (Amersham Pharmacia) and quantified by scanning densitometry and computer-assisted image analyzer.
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3

Western Blot Analysis of Protein Targets

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Protein analysis was performed via Western blotting on brain and kidney homogenates separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to a polyvinylidene difluoride membrane (Whatman) and blotted for CGL (ab8245; Abcam), CBS (ab135626; Abcam), glyceraldehyde 3-phosphate dehydrogenase (GAPDH; ab8245; Abcam), and αTubulin (ab4074; Abcam), followed by horseradish peroxidase (HRP)-conjugated secondary anti-rabbit antibody (ab97051; Abcam) or anti-mouse antibody (62-6520; Invitrogen). Proteins were visualized by using SuperSignal West Femto Maximum Sensitivity Substrate (No. 34096; Thermo Scientific) on an Amersham Imager 600 (General Electric), and size was determined by using the PageRuler Plus Prestained (No. 26619; Thermo Fisher).
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4

Quantitative Protein Analysis of Cell Signaling Pathways

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Following the manufacturer's steps to extract the total protein (Sigma) from the cell line, all steps are carried out on ice. BCA protein assay kit determinate the concentration of total protein. The electrophoresis protein was heated to 100°C, incubated for 5 min, then using electrophoretic with SDS- polyacrylamide gel (120 v, 100 min). Afterwards, the protein separated from SDS gel was transferred to PVDF membrane (300 mA, 80 min). After the membrane transfer was completed, the target band was sealed with 5% TBS, and membrane was incubated with an anti-rabbit monoclonal anti-human GAPDH antibody (abcam catalog number ab8245), diluted overnight at 4°C with a dilution of 1:1,500. After incubation on the second day, the membrane was incubated with horseradish peroxidase to incubate the (HRP)-coupled polyclonal Goat anti-Rabbit IgG-HRP (Bioworld) second antibody (1:10,000). It was placed at room temperature for 1 h. The film has an enhanced chemiluminescence system and is imaged by X-ray film. The image is then quantized by Image J (NIH). Information about first antibody GAPDH (ab8245; abcam); PTEN (ab170941; abcam); AKT (ab8805; abcam); p-AKT (4060T; Cell Signaling Technology); PI3K (ab151549; abcam); p-PI3K (17366S; Cell Signaling Technology); Caspase-3 (ab13847; abcam); Caspase-9 (ab32539; abcam). The image is then quantized with Image J (NIH).
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5

Analyzing Liver Protein Signaling

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Total proteins were extracted by RIPA buffer (i.e., 50 mM Tris-HCl pH 7.4, 150 mM NaCl, 2 mM EDTA, 1% NP-40, and 0.1% SDS, Thermo Fisher Scientific, USA) containing proteinase inhibitor cocktail (Roche, Germany) and phosSTOP phosphatase inhibitor cocktail (Roche, Germany) from homogenised liver tissues. Then the proteins were separated by SDS - PAGE electrophoresis, and were transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Germany). The membranes were blocked with 5% slim milk and incubated with primary antibodies including p-PI3K (ab245781, Abcam, USA; 1:1,000), PI3K (ab191606, Abcam, USA; 1:1,000), p-Akt (ab81283, Abcam, USA; 1:1,000), Akt (ab8805, Abcam, USA; 1:1,000) and GAPDH (ab8245, Abcam, USA; 1:1,000). After incubation with secondary antibodies, protein bands were visualised using an ECL detection kit (Thermo Fisher Scientific, USA). Protein expression levels were quantified by densitometry using ImageJ software (National Institutes of Health, Bethesda, MD, USA) and normalised to GAPDH (ab8245, Abcam, USA; 1:1000).
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6

Quantifying Apoptosis Markers in VSMCs

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VSMCs from each group were collected and lysed on ice using lysis buffer (Solarbio, Beijing, China). The mixture was centrifuged at 12,000 rpm at 4°C for 15 minutes. After discarding the supernatant, the protein concentration was determined using a BCA kit (Merck, Kenilworth, NJ, USA). Equal amounts of protein were used for sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were transferred onto a polyvinylidene difluoride (PVDF) membrane, which was then blocked with 5% skimmed milk at 25°C. The membrane was then incubated at 4°C overnight with the following primary antibodies, which were all purchased from Abcam: anti-Bax (ab3191, 1 : 2000), anti-Bcl-2 (ab196495, 1 : 1000), anti-vascular cell adhesion molecule 1 (VCAM-1; ab174279, 1 : 2000), anti- intercellular cell adhesion molecule-1 (ICAM-1; ab109361, 1 : 2000), anti-E-selectin (ab137732, 1 : 2000), anti-GBP-1 (ab22604, 1 : 2000), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (ab8245, 1 : 5000). The next day, the membrane was rinsed and incubated with the secondary antibody at 37°C for 30 minutes. Enhanced chemiluminescence (ECL) reagent (Thermo Fisher Scientific) was used to visualize the protein bands and GAPDH was used to normalize the protein levels.
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7

Protein Expression Analysis in Mouse Retina

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The neuroepithelial layer of each mouse's retina was weighed and cut into small pieces. The tissue was then lysed in lysis buffer (50-mM Tris/HCl, pH 7.3; 150-mM KCl; 50-mM EDTA; 0.2% Triton X-100; 0.2% NP-40) at a volume of 1:10 on ice for 20 minutes, followed by 15-minute centrifugation at 9000g at 4°C. The supernatant was collected immediately for western blot analysis. Crude protein lysate (25 µg) was mixed with 1 µL of loading dye buffer, heated at 95°C for 1 minute, and directly loaded onto 4% to 21% gradient SDS-PAGE gel together with a prestained standard protein molecular weight marker. Electrophoresis was run at a constant voltage of 120 V for <60 minutes until the front line was close to the edge of the gel. The proteins were then transferred to a polyvinylidene chloride (PVDC) membrane at 4°C overnight and probed with S1R (1:500, 4912; Cell Signaling, Danvers, MA, USA) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:1000, ab8245; Abcam) antibodies. The target bands were analyzed using Bandscan 5.0 image analysis software. GAPDH was used as an internal control to calculate the relative expression of the protein.
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8

Quantitative Protein Expression Analysis

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Liver tissue was lysed with RIPA lysis buffer to extract total protein. The protein concentration was determined using a BCA protein assay kit (Thermo Fisher Scienti c). Then, 20 µg of protein were separated on sodium dodecyl-sulfate polyacrylamide gel electrophoresis gels and transferred onto polyvinylidene uoride membranes (Millipore, Burlington, MA, USA). The membrane was blocked with 5% non-fat milk for 1 h and then incubated with speci c primary antibodies overnight at 4 ℃ (anti-BMAL1:1:1000, ab235577; anti-cluster of differentiation 36 [CD36]: 1:1000, ab252922; anti-peroxisome proliferator-activated receptor gamma [PPARγ]: 1:1000, ab272718; anti-glyceraldehyde-3-phosphate dehydrogenase [i.e., GAPDH]: 1:1000, ab8245; and anti-β-ACTIN:1:1000, ab8226; all purchased from Abcam, Cambridge, UK). After incubation, the membrane was washed and incubated with a horseradish peroxidase-conjugated secondary antibody (1:2000, ab288151, purchased from Abcam, Cambridge, UK) for 1 h at room temperature. Protein bands were visualized using enhanced chemiluminescence substrate (Thermo Fisher Scienti c). Protein band density was quanti ed using ImageJ software (National Institute of Health, Bethesda, MD, USA) and normalized to β-actin levels.
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9

Evaluating Autophagy and Apoptosis Markers

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Proteins from NPC cells and tumor tissues were isolated using RIPA buffer (Beyotime); the concentration of protein samples was tested using a BCA Protein Assay Kit (Solarbio). Afterward, 50‐μg protein samples were loaded and separated by 10% SDS‐PAGE and transferred to nitrocellulose membranes. After blocking with 5% BSA for 2 hours, the membranes were incubated overnight with indicated primary antibodies against LC3B (1:1000, #43566), p62 (1:1000, #39749), Beclin 1 (1:1500, #3495), uncleaved caspase‐3 (1:2000, #14220), cleaved caspase‐3 (1:2000, #9664), uncleaved PARP (1:1500, #9532), cleaved PARP (1:1500, #5625), Bax (1:1000, #2772), Bcl‐2 (1:2000, #3498), p‐AKT (1:1500, ab38449; Abcam), AKT (1:1000, ab8805, Abcam), p‐mTOR (1:2000, ab109268; Abcam), mTOR (1:2000, ab32028, Abcam), p‐p70S6K (1:1000, #97596), p70S6K (1:2000, #2708), p‐ULK1 (1:1000, #5869), ULK1 (1:2000, #8054), and GAPDH (1:5000, ab8245; Abcam). After three washes with PBS, the membranes were probed by corresponding HRP‐conjugated secondary antibody for 2 hours. Enhanced chemiluminescence reagent (EMD Millipore) was employed to visualize signal, and Image J software was used to analyze signal. Antibodies were all obtained from Cell Signaling Technology unless indicated otherwise.
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10

Western Blot Analysis of AMH in COV434 Cells

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Transfected COV434 cells were harvested and homogenized with a RIPA buffer, pH 7.4 (BioBasic, Toronto, Canada) containing phosphatase and protease inhibitors (Roche, Basel, Switzerland). A Bicinchoninic Acid Protein Assay Kit (Thermo Scientific, Rockford, IL, USA) was to calculate protein concentrations, and plates were read in a Varioskan multimode plate reader (Thermo Scientific). Criterion XT precast gels (4–20% bis–tris) (Biorad, Hercules, CA, USA) were loaded with 50 µg of total protein per well and transferred to a nitrocellulose membrane. Primary antibodies were anti-AMH (Ab229212, 1:2000, Abcam) and anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Ab8245; 1:10,000, mouse monoclonal, RRID: AB2107448, Abcam). ChemiDocTM XRS + imager was used to scan the membrane, and Image Lab software (Biorad) assisted in quantifying the intensity of the bands of interest.
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