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637 protocols using anti ki67

1

Western Blot Antibody Analysis

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Western immunoblotting was accomplished as previously described (25 (link),26 (link)) using the following primary antibodies: anti-caspase-9 (Assay Designs); anti-FLAG and anti-β-actin (Sigma); anti-p65, anti-NF-κB2, anti-IκBα, phospho-IκBα, anti-laminA/C, anti-α-tubulin, anti-NIK, anti-RIP1, anti-cIAP1, anti-cIAP2, anti-Apaf1, anti-myc (Cell Signaling Technology); anti-K48, anti-Ki-67, and K63-linkage specific ubiquitin, and anti-Ki-67 (Abcam). Secondary antibodies were horseradish peroxidase-conjugated anti-rabbit IgG and anti-mouse IgG antibodies (Cell Signaling Technology).
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2

Quantifying Infarction, BBB Permeability, and Microvascular Remodeling

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Seven days after vehicle or HS7 injection, rats were anesthetized. Perfused brains were snap-frozen, stored at -80°C, then cryosectioned into 7 regions of interest at 1 mm intervals. Infarction volumes were quantified on Nissl stained-sections using Image-J in a blinded manner. 29, (link)33 (link) To assess blood-brain barrier (BBB) permeability, 5 regions of interest at 1 mm intervals were fixed with 4% paraformaldehyde and stained with IgG antibody (1:100; Abcam) and 0.05% diaminobenzidine for 5 minutes. Extravascular IgG was quantified using the grey-level-index and mean intensity compared with its contralateral hemisphere IgG control, using Image-J. 34 (link) To assess microvessel remodelling, doublelabelling for anti-type IV collagen (1:50; SouthernBiotech) and anti-Ki67 (1:200; Abcam) was employed and for neural stem/progenitor cell proliferation, nestin (1:200; Abcam) and anti-Ki67 (1:200; Abcam).
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Immunofluorescence and Immunoblotting Antibodies

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For immunofluorescence microscopy, the following primary antibodies were used: monoclonal anti-T7 (Covance; 9115), anti-SRSF6 (CSHL; mAb 9 1-56), anti-keratin 6 (Abcam; SPM269) and polyclonal anti-keratin 5 (Covance; PRB-160P), anti-keratin 14 (Covance; PRB-155P), anti-loricrin (Covance; PRB-14P), anti-KI67 (Epitomics; 15580), anti-c-myc (Abcam; 39688), anti-β-catenin (Cell Signaling; 9587). For immunoblotting, the antibodies used were: monoclonal anti-SRSF6 (CSHL; mAb 9 1-56), anti-GAPDH (Abcam; 6C5), anti-TNC (4C8MS; Novus Biologicals; 4C8MS) and polyclonal anti-keratin 5 (Covance; PRB-160P). For tissue microarray analysis, monoclonal anti-SRSF6 (CSHL; mAb 9 1-56) was used. Typical antibody dilutions were 1: 25 for IHC and 1:1000 for immunoblotting.
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Immunohistochemical Staining of Tissue Samples

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Briefly, after deparaffinization and dehydration, specimens were boiled in 10 mM sodium citrate buffer to unmask antigens. Specimens were then blocked and incubated with primary antibody overnight at 4°C. Antibody binding was detected using Envision reagents (Boster bioengineering, Wuhan, PR China) according to the manufacturer's instructions. Primary antibodies used in this study were rabbit polyclonal anti-Ki67 (Epitomics, Burlingame, CA, USA, 1∶100 dilution), rabbit monoclonal anti-ERα (Epitomics, 1∶100 dilution), rabbit monoclonal anti-PTEN (Epitomics, 1∶100 dilution) and rabbit polyclonal anti-TIMP3 (Proteintech Group Inc., Chicago, IL, USA, 1∶50 dilution).
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5

IHC Staining Protocol for Evaluating Ki-67 and FLOT1

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IHC staining was conducted as described previously [48 (link)]. Briefly, tissue sections were dewaxed and rehydrated before performing antigen retrieval. The slides were incubated with anti-ki-67 or anti-FLOT1 (Epitomics, Burlingame, USA) overnight at 4°C, and incubated with an HRP-conjugated secondary antibody for 1 h at room temperature. DAB was used for color development, and dark brown staining was considered positive. The strength of positivity was semi-quantified by taking into account the staining intensity and the percentage of positive cells.
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6

Immunohistochemical Staining of Tumor Samples

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IHC staining was performed as previously described [42 (link)]. In short, tumor tissues from mice were dewaxed and rehydrated before conducting antigen retrieval. Slides were incubated with anti-HIF-1α (Cell Signaling Technology, Beverly, MA), anti-ki-67 or anti-active caspase-3 (Epitomics, Burlingame, USA) at 4°C overnight, followed by incubation with an HRP-conjugated secondary antibody at room temperature for 1 hour (h). Diaminobenzidine (DAB) was used for coloration, and dark brown was considered to be positive. The strength of positivity was quantified by considering the percentage of positive cells and the staining intensity.
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Immunofluorescence and Immunoblotting Antibodies

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For immunofluorescence microscopy, the following primary antibodies were used: monoclonal anti-T7 (Covance; 9115), anti-SRSF6 (CSHL; mAb 9 1-56), anti-keratin 6 (Abcam; SPM269) and polyclonal anti-keratin 5 (Covance; PRB-160P), anti-keratin 14 (Covance; PRB-155P), anti-loricrin (Covance; PRB-14P), anti-KI67 (Epitomics; 15580), anti-c-myc (Abcam; 39688), anti-β-catenin (Cell Signaling; 9587). For immunoblotting, the antibodies used were: monoclonal anti-SRSF6 (CSHL; mAb 9 1-56), anti-GAPDH (Abcam; 6C5), anti-TNC (4C8MS; Novus Biologicals; 4C8MS) and polyclonal anti-keratin 5 (Covance; PRB-160P). For tissue microarray analysis, monoclonal anti-SRSF6 (CSHL; mAb 9 1-56) was used. Typical antibody dilutions were 1: 25 for IHC and 1:1000 for immunoblotting.
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8

Histological and Immunofluorescence Analysis of Colon Tissue

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For hematoxylin and eosin (H&E) staining, mouse colon tissues were fixed in 4% paraformaldehyde and embedded in paraffin and then incised a 4‐μm section. The sections were stained with both hematoxylin and eosin, and then photographed using an electron microscope.
For immunofluorescence staining, colon biopsies from UC patients and mice were embedded in O.C.T. compound (Tissue Tek, Sakura, Torrance, CA, USA), and then incised 8‐μm sections and processed for immunostaining. The DP1 expression was examined with polyclonal anti‐DP1 primary antibody (Cayman Chemical, Ann Arbor, MI, USA). The endothelial cells were marked with anti‐CD31 (1:200, BD Biosciences, San Diego, CA, USA). To detect epithelial cell and macrophage, anti‐pan‐keratin‐FITC antibody (Cell Signaling Technology, Danvers, MA, USA) and anti‐CD68 (1:200, AbD Serotec, Kidlington, UK) primary antibody were used. To label the smooth muscle cells, the anti‐α‐actin‐FITC antibody (1:200, Sigma‐Aldrich, St. Louis, MO, USA) was used. Anti‐CD301 (1:100 Bio‐Rad, California, USA) primary antibody was used to mark M2‐like macrophage, and anti‐Ki67 (1:500, Epitomics, Burlingame, CA, USA) primary antibody was used to label proliferating cell.
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9

Immunohistochemical Analysis of cSCC

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cSCC skin reconstruct were fixed with formalin for 2 h at room temperature, dehydrated and embedded in paraffin. The staining was performed using the UltraVision LP Detection System AP Polymer & Fast Red Chromogen assay (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s instructions. Briefly, slides were treated with Ultra V Block and samples were incubated with anti-Ki-67 (1:200; Epitomics, Burlingame, CA, USA), or anti-keratin (ready to use; Cell Marque), or anti-MMP9 (1:100; Abcam, Cambridge, UK) or anti-psoriasin (1:50, Abcam, Cambridge, UK) for 1 h at room temperature.
After washes in PBS, Primary Antibody Enhancer (Thermo Fisher Scientific, Waltham, MA, USA) was added for 20 min at room temperature, followed by incubation with AP Polymer anti-mouse/rabbit IgG for 30 min at room temperature. Slides were stained with Fast Red using Naphthol Phosphate as substrate. Samples were analyzed under a conventional optical microscope (Zeiss Axioskope 40, Carl Zeiss, Jena, Germany).
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10

Immunohistochemical Analysis of Tumor Markers

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The paraffin-embedded tumor sections were stained for anti-Ki67, anti-PCNA, anti-MMP-9, and anti-VEGF (Abcam). Sections (2 µm) were deparaffinized and pretreated with citrate buffer using a heat-induced epitope retrieval protocol. Endogenous peroxidase was blocked with 20% hydrogen peroxide for 15 minutes at room temperature followed by incubation with anti-Ki67, anti-PCNA, anti-MMP-9, and anti-VEGF for 30 minutes, respectively. A biotinylated goat anti-mouse immunglobulin G secondary antibody (Dako, Glostrup, Denmark) was then applied to each slide for 30 minutes. After washing in Tris-hydrochloric acid buffer, the slides were incubated with peroxidase-conjugated streptavidin complex reagent (Dako) and developed with 3,3′-diaminobenzidine for 5 minutes. The slides were counterstained and dehydrated.
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