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81 protocols using anti tlr4

1

Western Blot Analysis of TLR4 and HMGB1

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Lumbar spinal cord homogenates were resolved on a 10% sodium dodecyl sulphate polyacrylamide gel and electro-transferred onto nitrocellulose membranes. The membrane was incubated with anti-TLR4 (1:500; Santa Cruz Biotechnology, Dallas, Texas, USA) or anti-HMGB1 (1:1000; Abcam, Melbourne, Victoria, Australia) antibodies and were detected with enhanced chemiluminescence (GE Healthcare, Sydney, New South Wales, Australia). Densitometric analyses of immunoreactive bands were quantified as described previously [12 (link)].
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2

Cholesterol and Protein Analysis in Vesicles

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Cholesterol in vesicles was measured using a cholesterol fluorometric assay kit purchased from Cayman chemicals (Cat. No. 10007640, Ann arbor, MI USA) and the measurement was performed following the manufacturer's guideline. Protein contents were measured by a bicinchoninic acid (BCA, Cat. No. 23228, Rockford, IL) kit. The vesicle surface proteins were detected using western blotting. The samples (20 μg total proteins) were separated on SDS-PAGE and transferred to PVDF membranes. The membranes were then blotted with specific antibodies for each protein. Antibodies, such as anti-integrin β2 (Cat. No. 393790, clone C-4), anti-integrin α4 (Cat. No. 365569, clone C-2), PSGL-1 (Cat. No. 13535, clone KPL1), anti-PECAM-1(Cat. No. 376764, clone H-3) anti-αV (Cat. No. 376156, clone H-2), anti-TLR4 (Cat. No. 293074, clone 25) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Sheep anti-hCD47 polyclonal antibodies were obtained from R&D systems Inc (Cat. No. AF4670-SP, Minneapolis, MN). Next, the HRP-conjugated goat anti-mouse antibody (Cat. No. 2005) or donkey anti-sheep antibody (Cat. No. 2473, Santa Cruz, CA) was incubated following addition of West Femto Maximum Sensitivity Substrate (Cat. No. 34095, Thermo Scientific, Rockford, IL) for Western blot quantification.
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3

Co-immunoprecipitation of TLR4 and TRAF6

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Co-immunoprecipitation (Co-IP) was performed using a Thermo Scientific Pierce Co-IP kit (#26149) following the manufacturer’s protocol. Briefly, the antibodies of TLR4 (10 μg/mL, Santa Cruz) and TRAF6 (10 μg/mL, CST) were first immobilized for 2 h using an AminoLink Plus coupling resin. The resin was then washed and incubated with arterial lysate overnight. After incubation, the resin was washed, and the protein was eluted with an elution buffer. The samples were analyzed by Western blotting as previously described. Anti-TLR4 (1:500, Santa Cruz), anti-MyD88 (1:500, Abcam), anti-TRAF6 (1:1000, CST), and anti-K63 polyubiquitin chain (1:500, CST) were used for the analysis. All experiments were performed independently for three times.
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4

Immunofluorescence Analysis of ICAM-1, TLR4 and Golgin-97

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Cells were seeded onto LabTek chambers (Nunc, Rochester, NY, USA) until confluence and were then stimulated for 16h in the chambers. Cells were then washed twice with pre-warmed (37°C) PBS containing Ca++ and Mg++ and then fixed for 30min at room temperature with PBS Ca-Mg containing 2% PFA and 2% sucrose. After fixation, we performed two quenching steps with PBS containing glycine 0.1M and NaN3 0.01% for 10min and a permeabilization step using PBS containing 0.2% saponin, 2% BSA, for 20min at room temperature. Staining was performed using the anti-ICAM-1 primary antibody clone 2D5 with a secondary goat anti-mouse antibody coupled to TRITC (Jackson ImmunoResearch); anti-TLR4 (Santa Cruz, Santa Cruz, CA, USA) with a secondary goat anti-rabbit antibody coupled to Alexa 488; or the anti-golgin 97 (Invitrogen) with a secondary goat anti-mouse antibody coupled with Alexa 555. Nuclei were labeled with Hoechst 33342. Cells were observed with an epi-fluorescence microscope (Carl Zeiss AxioImager) with the pseudo-confocal module APOTOME. Images were analyzed with ImageJ software (ImageJ, NIH, USA). For co-localization experiments, the Pearson’s correlation coefficient (Rr) and the Mander’s overlap coefficient (R) were calculated using the ImageJ co-localization plugin after background subtraction.
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5

Western Blot Analysis of Autophagy Markers

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Cell lysates or mouse tissue homogenates were separated by electrophoresis on 10% SDS-PAGE, transferred on PVDF membranes (Merck Millipore, Burlington, MA, USA), blocked in 5% of non-fat dry milk, and incubated with primary antibodies including anti-Bax (1:2000, Abcam), anti-Beclin-1 (1:1000, Cell Signaling), anti-CitH3 (1:1000, Abcam), anti-LC3 (1:1000, Cell Signaling), anti-mTOR (1:1000, Cell Signaling), anti-p53 (1:1000, Santa Cruz), anti-PAD4 (1:1000, Abcam), anti-TLR4 (1:000, Santa Cruz), anti-TRAF6 (1:1000, Santa Cruz), anti-GAPDH (1:5000, Proteintech, Rosemont, IL, USA) or anti-β-actin antibodies (1:5000, Sigma-Aldrich) at 4 °C for 16 h. After washing, the membranes were incubated with HRP-conjugated secondary antibodies (1:10,000, Jackson Immunoresearch, West Grove, PA, USA) at RT for 2 h. Signal expression of protein-antibody complexes was detected by ECL system (Amersham Pharmacia Biotech, Buckinghamshire, UK) and visualized with Biospectrum imaging system (UVP, Upland, CA, USA). Relative protein expression levels were measured by Image J (National Institute of Health, Bethesda, MD, USA).
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6

LPS-Induced Protein Extraction Protocol

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RAW264.7 cells were plated in 100-mm dishes and stimulated with LPS for 1 h. The cytoplasmic and nuclear proteins were extracted following the procedure described previously.47 (link), 48 (link) Preparation of total protein extracts from mice liver was performed. The extracted proteins were separated by SDS-PAGE 12% polyacrylamide gel and then electrically transferred to a PVDF membrane. After blocking with 5% (w/v) BSA in TBST at room temperature for 1 h, the membranes were then incubated with an appropriate specific primary antibody (anti-NF-κB p65, 1 : 500; anti-β-actin, 1 : 1000; Bioworld, Minnesota, MN, USA. anti-CD14, 1 : 500; anti-TLR4, 1 : 500; Santa Cruz Biotechnology) at 4 °C overnight, followed by incubation with HRP-conjugated secondary antibody (1 : 10 000; Sunshine Biotechnology, Nanjing, China) and detected by enhanced chemical luminescence kit (Thermo Scientific, Hudson, NH, USA).
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7

Western Blot Analysis of Cellular Markers

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GSS was purchased from the HANKOOK SHINYAK Corporation (Chungcheongnam-do, South Korea). Primary antibodies used for Western blotting were as follows: anti-ionized calcium-binding adapter molecule 1 (Iba-1; 1 : 1000; Wako, Japan), anti-glial fibrillary acidic protein (GFAP; 1 : 3000; Millipore, MA, USA), anti-survival motor neuron (SMN; 1 : 1000; Santa Cruz Biotechnology, CA, USA), anti-TLR4 (1 : 1000; Santa Cruz Biotechnology), anti-CD14 (1 : 1000; BD Pharmingen, CA, USA), anti-COX2 (1 : 1000; Abcam, MA, USA), anti-transferrin (1 : 1000; Santa Cruz Biotechnology), anti-HO1 (1 : 1000; Abcam), anti-Bcl2 associated X (Bax, 1 : 1000; Santa Cruz Biotechnology), anti-phospho 5′-adenosine monophosphate-activated protein kinase (pAMPK; 1 : 1000; Cell Signaling, MA, USA), anti-AMPK (1 : 1000; Cell Signaling), and anti-phospho mammalian target of rapamycin (mTOR; 1 : 1000; Cell Signaling). Anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1 : 1000; Santa Cruz Biotechnology) was used to control for protein loading. Peroxidase-conjugated secondary antibodies were purchased from Santa Cruz Biotechnology.
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8

Western Blotting Analysis of Apoptosis and Inflammation Signaling

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Western blotting analysis was carried out as previously described [25 (link)]. The following antibodies were used: anti-Bcl-2 (#ab182858), anti-Bax (#ab182733), anti-Bcl-xl (#ab32370), anti-p-P65 (#ab76302), anti-P65 (#ab32536), anti-p-IκBα (#ab133462), anti-IκBα (#ab32518) (Abcam Cambridge, MA, USA), anti-FXR (#sc-25309), anti-TLR4 (#sc-293072) (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p-ERK1/2 (#4370), anti-ERK1/2 (#4695), anti-p-P38 (#4511), anti-P38 (#8690), anti-p-JNK1/2 (#4668), anti-JNK1/2 (#9252), anti-CCL2 (#66272-1-Ig), and anti-β-actin (#66009-1-Ig) (Proteintech, Wuhan, China).
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9

Western Blotting for TLR4 and TLR9 Expression

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Cell pellets were processed for western blotting as previously described (Redfern et al., 2011 (link)). The membranes were probed with anti-TLR4 (0.2 μg/ml, Santa Cruz Biotechnology) or anti-TLR9 (1 μg/ml, AbCam; Cambridge, MA) antibodies, then incubated with horseradish peroxidase-conjugated secondary antibody, and visualized with ECL Plus (GE Healthcare; Piscataway, NJ). The membranes were stripped and reprobed using a GAPDH antibody as previously described (Giddabasappa et al., 2011 (link)). Densitometry measurements were obtained from non-saturated blots and the pixel intensity was normalized to GAPDH. Data are representative of a minimum of three experiments and were analyzed using an unpaired Student's t-test, with P ≤ 0.05 considered as statistically significant.
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10

Investigating NF-κB Signaling Pathway

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PB2 (purity > 90%), DEX (used as a positive control), and LPS derived from bacteria (serotype: 0111:B4, L5293) were purchased from Sigma (St. Louis, MO, USA). Anti-NF-κB, anti-p-NF-κB, anti-Akt, anti-p-Akt, anti-PI3K, anti-p-PI3K, anti-YAP, anti-p-YAP, anti-ROCK, anti-Rhoc, and anti-β-actin antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-TLR4 and anti-p-LATS1/2 (phospho-Ser909/872) antibodies were obtained from Santa Cruz Biotechnology (Dallas, TX, USA) and MyBioSource (San Diego, CA, USA), respectively.
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