The largest database of trusted experimental protocols

6 protocols using microson xl 2000

1

FMDV 3C Protease Purification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
A pET28b plasmid encoding the Δ3B1-3B2-3B3-3C-His6 sequence from FMDV A1061 with two mutations to enhance enzyme solubility (C95K/C142A) was obtained from Stephen Curry at Imperial College London (50 (link)). Escherichia coli BL21(DE3) pLysS was transformed with this plasmid and grown to an optical density at 600 nm of 0.4 to 0.7 absorbance units. Expression was induced by the addition of 1 mM isopropyl-β-d-thio-galactosidase (IPTG; Sigma) for 4 h at 37°C. Bacteria were harvested by centrifugation and resuspended in a lysis buffer containing 50 mM HEPES, pH 7.1, 200 mM NaCl, 1× HALT protease inhibitor cocktail (Thermo Fisher Scientific), 1% Igepal CA-630 (Sigma), 100 μg/ml lysozyme, 100 μg/ml DNase (Invitrogen) on ice for 1 h. Lysates were subjected to 12, 30-s sonication cycles at an amplitude of 10 μm (Microson XL-2000; Misonix) with 30 s on ice between each sonication. Lysates were clarified by centrifugation and His-tagged 3Cpro purified by nickel ion affinity chromatography using HisTrap columns (GE Healthcare). Elution fractions were analyzed by SDS-PAGE, and fractions with the highest concentration of purified protein were pooled and dialyzed against 50 mM HEPES, pH 7.1, 0.2 M NaCl, 1 mM EDTA, 1 mM β-mercaptoethanol, and 5% glycerol. Purified dialyzed proteins were stored at −80°C.
+ Open protocol
+ Expand
2

Sal-Doc SE-NP Encapsulation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Sal-Doc SE-NP was prepared by modified single emulsion method (Cui et al., 2014 (link)) with 10 mg copolymer, 1 mg Sal, and 4 mg Doc. Dissolved in 0.5 ml DCM, the mixture was emulsified by sonication with Microson XL2000 (Misonix, USA) in 1.5 ml 3% PVA solution (w/v) with 5 W of power for 60 seconds. The o/w emulsion was then emulsified with 2.5 ml of solution containing 0.5% (w/v) PVA with 2.5% of power by sonication for 10 seconds. The w/o/w emulsion was gently stirred at room temperature and filtered to remove dissociative drugs.
+ Open protocol
+ Expand
3

Quantifying MMP-13 in Periodontal Disease

Check if the same lab product or an alternative is used in the 5 most similar protocols
After 28 days of A. actinomycetemcomitans infection, mouse molars and the buccal gingival epithelial layer were harvested and homogenized in PBS containing a complete EDTA-free protease inhibitor cocktail (Roche Diagnostics, Mannheim, Germany) and 0.05% Triton X-100 by ultrasonic fragmentation using a Microson XL-2000 (Misonix, Farmingdale, NY). Homogenized samples were centrifuged at 13000 g for 10 minutes at 4°C, and the supernatants were collected. MMP-13 in supernatants was measured using an ELISA kit (Cloud-Clone Corp., Houston, TX) according to the manufacturer’s instructions. The minimum detectable concentration was 78 pg/ml.
+ Open protocol
+ Expand
4

Corticosterone Quantification Workflow

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues were dissected and immediately frozen in dry ice and stored at –80°C until processing. Frozen tumors were bisected and a piece from the interior of the tumor (approximately 50 mg) or piece of spleen (also approximately 50 mg) was removed and weighed. Tissues were briefly thawed on wet ice, diluted in 1 ml ice-cold 75% methanol, and immediately homogenized for 20 to 30 seconds with a Misonix Microson XL-2000 ultrasonic homogenizer. Homogenates were then incubated 30 minutes on wet ice, centrifuged at 10,000g for 10 minutes at 4°C, and placed in wet ice; 300 μL of supernatant was diluted with 5 ml water and immediately applied to C18 solid-phase extraction columns (Agilent Bond Elut C18 OH, 500 mg) that had been preconditioned with 3 ml hexane, 3 ml acetone, 3 ml methanol, and 5 ml water. After loading onto C18 columns, samples were washed with 5 ml 40% methanol, dried, and steroids eluted with 5 ml 90% methanol. Eluates were dried at 60°C in a Thermo SpeedVac vacuum centrifuge. Steroids were resuspended with 8 μL ethanol, briefly vortexed, diluted with 142 μL assay buffer, vortexed, and diluted 10-fold in assay buffer prior to corticosterone quantification by enzyme immunoassay.
+ Open protocol
+ Expand
5

ChIP Assay with MAGnify System

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP assays with the MAGnify Chromatin Immunoprecipitation System (Invitrogen) were performed according to manufacturer's protocol. Confluent cells were crosslinked in 1% formaldehyde for 10 minutes, sheared to 100–700 base pair fragments with a Misonix Microson XL 2000 at power level 10 repeating a 5 seconds on/5 seconds off cycle 30–35 times on ice. Invitrogen Dynabeads were incubated with the following antibodies for 1–2 hours at 4°C: 1 μL IgG rabbit (Invitrogen), 2 μL UBF (Santa Cruz 9131), 4–5 μL TRF2 (Novus NB110-57130), 2 μL H3K4me2 (Abcam ab7766), and 1.5 μL H3K9me3 (Abcam ab8898). 150,000 cells were used in each immunoprecipitation (IP) and incubated with the antibody/Dynabeads for 2–3 hours at 4°C. Beads were washed, chromatin reverse crosslinked, and DNA eluted according to the MAGnify ChIP protocol. ChIPs were repeated at least 3 times for each modification.
+ Open protocol
+ Expand
6

DNMT1 Binding to GATA-1 Promoter by ChIP Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP assay was performed with the EZ-ChIP kit (Millipore, Billerica, MA, USA) as described previously.42 (link) Briefly, Meg-01 cells with or without DENV infection for 3 days were crossed-linked by 1% formaldehyde for 5 min. The cells were lysed in an SDS lysis buffer, and lysates were sonicated with alternating 30 s pulses for 8 times with an ultrasonic cell disruptor (Microson XL2000, Misonix Inc., Farmingdale, NY, USA) to shear DNA. Immunoprecipitation was carried out overnight at 4°C with 5 μg anti-Dnmt1 (Abcam), or 1 μg anti-IgG antibodies in combination with protein G agarose provided in the EZ-ChIP kit. The immunoprecipitates were washed and reverse cross-linked, and the DNA was eluted. PCR was performed to detect the binding of DNMT1 to the GATA-1 promoter with specific primers 2,300 bp upstream of the transcription start site of human GATA-1 (GeneBank: NC_000023.11). The PCR primer pair used in the ChIP assay was GATA-1-2.3 k: 5′-GGCTGTCAATGGGTACAAAG-3′ (forward) and 5′-CGCCTCTTTCAGCTATTTTG -3′ (reverse). The PCR products were separated by 1.5% agarose gel electrophoresis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!