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Paraformaldehyde (pfa)

Manufactured by Wuhan Servicebio Technology
Sourced in China, United States, Japan

Paraformaldehyde is a powdered form of formaldehyde, a chemical compound used in various laboratory applications. It serves as a fixative, preserving the structure and morphology of biological samples for analysis and observation.

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279 protocols using paraformaldehyde (pfa)

1

Histological Analysis of Murine Organs

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After mice were sacrificed, the heart, liver, spleen, lungs, kidneys, ovaries and uterus were fixed in 4% paraformaldehyde (Servicebio, Wuhan, China) for 24 h. Then, paraformaldehyde was removed before samples were dehydrated, cleaned, waxed and embedded in paraffin. Lastly, the specimens were sliced at a 5 µm thickness and stained by H&E staining.
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2

Histological and Molecular Brain Analysis

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The animals were deeply anesthetized following sham or MCAO surgery and subjected to different processing methods. For histological analysis, after continuous cardiac perfusion with phosphate buffer saline (PBS) and paraformaldehyde (#G1101, Servicebio), the mouse brains were extracted and fixed in paraformaldehyde overnight, dehydrated with 30% sucrose solution, and finally sectioned at 20 μm thickness. For western blot and RT-PCR analyses, the brain tissues were removed quickly and stored at −80° C after sham or MCAO surgery.
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3

Quantifying IgG Extravasation in Rat Brain

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BBB disruption could be also assessed through a one-step immunohistochemical detection of IgG24 (link). The rats were transcardially perfused with PBS (pH 7.2 to 7.4, Beyotime) followed by ice-cold 4% paraformaldehyde (Servicebio, Wuhan, China). Then, rat brains were removed, post-fixed in 4% paraformaldehyde (Servicebio), cryoprotected in 15% and 30% sucrose in PBS (pH 7.2 to 7.4) (Beyotime) in turn for 2 days, and then sliced into 20 mm frozen sections on a freezing microtome (Leica, Japan). The sections were rinsed thrice with PBS (pH 7.2 to 7.4, Beyotime), followed by blocked with 10% normal goat serum (Vector Laboratories, Burlingame, CA, USA) for 1 h, and then the sections were incubated 1 h at room temperature with Alexa Fluor 488® conjugated goat anti-rat IgG (Abcam). After three rinses with PBS (pH 7.2 to 7.4, Beyotime) for 5 min each time, the fluorescent images were visualized with a VS200 Research Slide Scanner (Olympus, Tokyo, Japan), and the fluorescence intensity of lgG and area of lgG extravasation were measured by Image J software.
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4

Intestinal Tissue Preparation and Injury Evaluation

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Intestinal tissue specimens were prepared by perfusion fixation with 4% paraformaldehyde (Wuhan Servicebio Technology Co., Ltd) at room temperature on days 1, 7, 14 and 28 following MSCs or saline infusion (n=3 in each group), until the liver turned white, the samples were collected and eluted three times using PBS. Intestinal tissues were dissected and immersed in 4% paraformaldehyde (Wuhan Servicebio Technology Co., Ltd.) for 12 h initially and then immersed in 30% sucrose solution for 24 h at room temperature. The tissues were implanted in a cooled embedding medium (optimal cutting temperature solution; Sakura Finetek USA, Inc.). Following immediate freezing, tissues were cut using a frozen section machine (Leica Microsystems) into 7 µm thick slices for dyeing. The sections were stained with hematoxylin and eosin, as in previous studies (26 (link)). Stained sections were visualized and scanned using a Pannoramic MIDI CaseViewer 2.0 System (3DHISTECH Ltd.). According to Chiu et al (27 (link)), the degree of injury to the intestinal tissues was evaluated, with each degree of injury ranging from 0 to 5 points.
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5

Histological Assessment of Liver Tissue

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Tissues from the liver were fixed in 4% paraformaldehyde (Servicebio, Wuhan, China; G1101-500ML), embedded in paraffin, and sectioned at 5-μm intervals. Dewaxed, rehydrated paraffin-embedded liver sections were stained with H&E, Masson, and Sirius red.
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6

Histological and Immunofluorescent Analysis of Pancreas

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To obtain histological profiles of pancreas, pancreatic tissues were fixed in 10% formalin, embedded in paraffin, sectioned, stained with hematoxylin and eosin, and examined by microscopy. For immunofluorescence staining, pancreatic tissues were fixed in 4% paraformaldehyde (Cat#G1101, Servicebio), OCT (Cat#4583, Tissue-Tek) embedded, and sectioned. Sections were permeabilized in PBS containing 0.3% Triton X-100 (Cat#T8787, Sigma) and blocked in QuickBlock™ Blocking Buffer (Cat#P0260, Beyotime) prior to incubation with primary antibody against insulin (Cat#4590 S, CST, 1:100 dilution in blocking buffer) or Glut2 (Cat#sc-518022, C-10, Santa Cruz, 1:200 dilution in blocking buffer). Sections were then washed and incubated with Alexa Fluor 594-conjugated Donkey anti-Rabbit IgG (H + L) (Cat#711-585-152, Jackson, 1:200 dilution in blocking buffer) or Alexa Fluor 488-conjugated Donkey anti-Mouse IgG (H + L) (Cat#715-545-150, Jackson, 1:200 dilution in blocking buffer). After washing, sections were incubated with DAPI (Cat#H-1200, Vectorlabs) to stain the nuclear. Images were acquired on a confocal laser scanning microscope using Zen software (v2.3, Carl Zeiss) and analyzed using Image pro software (v6.0, Media Cybernetics).
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7

Radiographic and Histopathological Analysis of Ankle Joints

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For radiographic analysis, the hind limbs were imaged on a multimodality in vivo imaging system (Kodak Company, Rochester, NY, USA) shortly before the rats were sacrificed. The exposure time was 10 s, and the f-stop factor was 2.5.
For histopathological analysis, the protocol was performed as previously described [31 (link)]. Briefly, the fresh ankle joints were fixed with 4% paraformaldehyde (Servicebio, Wuhan, China) and then decalcified with 10% ethylene diamine tetraacetic acid (EDTA, Servicebio, Wuhan, China) at room temperature for 40 days. The processed joints were dehydrated, embedded, and sectioned at 4 μm thickness in a sagittal plane. Sections were then stained with hematoxylin-eosin (HE) for assessing EA's effect on the histopathological damage in joints. Images were acquired and observed under an upright light microscope (Nikon Inc., Tokyo, Japan). HE staining score was evaluated by an investigator who was blinded to the experimental protocol. The following morphological criteria were considered as follows [32 (link)]: score 0, no damage; score 1, edema; score 2, presence of inflammatory cells; score 3, bone resorption.
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8

Immunofluorescence Analysis of Cell Senescence

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The S-TSPCs and H-TSPCs were routinely fixed with 4% paraformaldehyde (Servicebio), permeabilized with 0.5% Triton X-100 (Thermo), and blocked with 5% BSA (Beyotime). The cells were then incubated overnight with primary antibodies against p16INK4A (1:500, Abcam, ab54210) and p21CIP1 (1:500, Abcam, ab109520) and incubated with Alexa Fluor 594- (1:1000, Abcam, ab150120) or Alexa Fluor 488-conjugated (1:1000, Abcam, ab150077) secondary antibodies.
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9

Transwell Assay for Cell Migration and Invasion

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Cell migration and invasion ability were examined by Corning transwell insert chambers (8 mm pore size, Corning). The transwell chamber was placed into the 24-well culture plate, the chamber was called the upper chamber, and the culture plate was called the lower chamber. In the migration assay, 2 × 105 cells were suspended in 100 μl FBS-free medium and were added to the upper chamber. 600 μl RPMI 1640 with 20% FBS were seeded in the lower compartment of the chamber and the cells were incubated in an environment of 37°C and 5% CO2. After 24 h, 4% paraformaldehyde (Servicebio, China) was used for fixation. Afterwards, 0.5% crystal violet was dyed for 10 min and the membrane was washed with PBS. The migrated cells on the lower surface were photographed randomly with an Olympus IX51 inverted microscope in five visual fields (× 200 magnification) and the migrated cells were quantified using Image J software. For invasion assay, the upper compartment was precoated with one hundred microliters of matrigel and 5 × 105 cells per invasion well were added to the upper chamber. After incubating for 48 h, the rest of the protocol was similar to the migration assay. Each assay was performed at least three times.
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10

Immunohistochemical Analysis of Tumor Samples

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The clinical PC and adjacent tissues were fixed with paraformaldehyde (Servicebio, Wuhan, China), embedded in paraffin (Boster, Wuhan, China), and sectioned into 4 μm thickness. After dewaxing, rehydration, and antigen retrieval with sodium citrate (Servicebio, Wuhan, China), tumor samples were blocked using H2O2 and 5% bull serum albumin (Servicebio, Wuhan, China) for 30 min at room temperature. The specimens were incubated with primary anti-TRA2A (1:100), KI67 (1:100), anti-PCNA (1:100), and anti-HIF1α (1:100) antibodies for 12 h and horseradish peroxidase-conjugated secondary antibodies (Zsjqbio.biogo; Beijing, China). Next, DAB was used to identify the antigen-antibody complex, and the samples were stained with hematoxylin to visualize the nucleus.
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