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Mirna mimic

Manufactured by Qiagen
Sourced in Germany, United States

MiRNA mimics are small, chemically modified double-stranded RNA molecules designed to mimic the structure and function of naturally occurring microRNA (miRNA) molecules. They are used in research applications to study the biological roles and regulatory functions of specific miRNAs in cells.

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43 protocols using mirna mimic

1

Optimizing Transfection Efficiency for Cell Experiments

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Cells were seeded at 70-80% confluency one day before transfection. All transfections (plasmids, siRNAs or miRNA mimics) were performed using Lipofectamine2000 (LF2000) according to the manufacturer’s instructions (0.4 μL/well in 96-well plates, 4 μL/well in 6well plates and 10 μL/dish in 10 cm dishes). Cells were incubated for 48 or 72 h at 37 °C, 5% CO2 in a humidified atmosphere before they were used for experiments.
All siRNAs (Dharmacon, Lafayette, USA) and synthesized miRNA mimics (Qiagen, Hilden, Germany) were used at a final concentration of 30 nM. The siRNAs purchased from siTOOLs Biotech (Planegg, Germany) were used at a final concentration of 2 nM. The sequences of siRNAs and miRNA mimics are listed in Additional file 2: Supplementary Table 1.
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2

Efficient Cell Transfection Optimization

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Cells were seeded at 70-80% con uency one day before transfection. All transfections (plasmids, siRNAs or miRNA mimics) were performed using Lipofectamine2000 (LF2000) according to the manufacturer's instructions (0.4 µL/well in 96-well plates, 4 µL/well in 6well plates and 10 µL/dish in 10 cm dishes). Cells were incubated for 48 or 72 h at 37°C, 5% CO 2 in a humidi ed atmosphere before they were used for experiments.
All siRNAs (Dharmacon, Lafayette, USA) and synthesized miRNA mimics (Qiagen, Hilden, Germany) were used at a nal concentration of 30 nM. The siRNAs purchased from siTOOLs Biotech (Planegg, Germany) were used at a nal concentration of 2 nM. The sequences of siRNAs and miRNA mimics are listed in Additional le 2: Supplementary Table 1.
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3

Synthesis of Multifunctional Nanodrugs

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The nanodrugs consisted of magnetic nanoparticles (MN, magnetic resonance imaging moiety) conjugated to LNA ASO or miRNA mimics (Exiqon, Denmark) as a therapeutic moiety (Fig. 1). The sequences of miRNA mimics, inhibitors and scramble controls used for the synthesis of the nanodrugs are included in Supplemental Table 1. Nanoparticles with a size of ~30 nm were used for conjugation to the oligonucleotides28 . Synthesis of the prototype nanodrugs have been previously described by us6 (link),29 (link) and involved: (1) synthesis of dextran-coated magnetic nanoparticles30 (link); (2) conjugation of Cy5.5 fluorescent dye. The number of dyes per magnetic nanoparticle was determined as 3.2 (6); (3) conjugation of antisense LNA inhibiting oligonucleotides (ASO) or miRNA mimics through heterobifunctional linker N-succinimidyl 3-[2-pyridyldithio]-propionate (SPDP; Thermo Scientific Co., Rockford, IL) to produce MN-ASO or MN-miRNA31 (link)–33 (link). ASO-scrambled (MN-ASOscr, single stranded) and mimics-scrambled (MN-miRNAscr, double stranded) nanodrugs were also synthesized as controls. The number of oligos per MN was determined as 4.0 using the electrophoresis analysis method described previously33 (link).
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4

miRNA Transfection in Cell Lines

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Hep3B, N2A and SH-SY5Y cells were cultivated according to standard procedures. Briefly, cells were maintained in Minimum Essential Medium supplemented with 1% glutamine, 5–10% foetal bovine serum (FBS) and antibiotics. HL-1 cardiomyocytes were cultured in Claycomb medium with 10% FBS supplemented with antibiotics and glutamine. 0.3 M ascorbic acid, 1 mM retinoic acid, 5 mg/ml insulin and 0.1 M norepinephrine were added to the medium. Cardiomyocytes cell plates had to be treated with 0.1% gelatin and 25 µg of fibronectin 24 h before seeding. The day before transfection, cells were seeded into 6-well culture cell plates (~200,000 cells per well). miRNA mimics (Exiqon) and antagomiRs (Exiqon) or miRVana Inhibitors (Ambion) were transfected using Lipofectamine 2000, following the manufacturer’s recommendations. 72–96 h after transfection, cells were harvested for miRNA analysis by qRT-PCR and for protein analysis by western blot.
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5

miRNA Overexpression in FDC-P1 Cells

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We purchased miRNA Mimics from Qiagen, including miR-221, miR-451a, miR654-3p, miR486-5p, miR142-5p, miR-466i-5p, miR106b, miR125a-5p, miR106b, miR210-5p, miR199, miR21-5p, and miR29a-3a. For miRNA overexpression experiments, 100 nM mimic RNA or control miRNA (control) in 100 μL “R buffer” was transfected into FDC-P1 cells using the Neon electroporation transfection system (Life Technologies) with an optimal program at 1,400 V with two 20 ms pulses.
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6

miRNA Overexpression in FDC-P1 Cells

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We purchased miRNA Mimics from Qiagen, including miR-221, miR-451a, miR654-3p, miR486-5p, miR142-5p, miR-466i-5p, miR106b, miR125a-5p, miR106b, miR210-5p, miR199, miR21-5p, and miR29a-3a. For miRNA overexpression experiments, 100 nM mimic RNA or control miRNA (control) in 100 μL “R buffer” was transfected into FDC-P1 cells using the Neon electroporation transfection system (Life Technologies) with an optimal program at 1,400 V with two 20 ms pulses.
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7

HBV Replication-Competent Clone and Signaling Modulators

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pSM2, an HBV replication-competent clone harbouring a head-to-tail tandem dimer of the HBV genome (GenBank accession number V01460, genotype D) was a kind gift from Dr Hans Will (Heinrich-Pette-Institute, Hamburg, Germany). The plasmid with ZNF143 expression was constructed on empty vector p3×FLAG-CMV-10 by General Biol Company (Chuzhou, China). The miRNA mimics, miRNAs inhibitor mimics, and all siRNAs were purchased from Qiagen. The mTOR activator MHY1485 was provided by Selleckchem. The mTOR inhibitor rapamycin (Calbiochem) was purchased from Merck Millipore (Germany).
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8

miRNA Transfection and Genome Analysis

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Primary HACs were plated at 2.5 × 105 cells/well of a 6-well tissue culture plate and incubated overnight in complete medium. Cells were transfected in serum- and antibiotic-free DMEM using Lipofectamine 2000 (Invitrogen), miRNA mimics at 30 nM (Qiagen), miRNA inhibitors at 50 nM (Qiagen), or non-targetting controls (All Stars at 30 nM (Qiagen), miScript Inhibitor control at 50 nM (Qiagen)), or mock transfection. Cells were incubated for 6 h in serum-free and antibiotic-free media. Media was replaced with complete medium for a further 48 h.
For functional analysis, RNA (pooled from three samples per condition) was subjected to whole genome array using the Illumina Human HT12v4 platform (Source Bioscience). Whole genome array was normalised using R with the Lumi package24 , background correction and normalisation used a between-array quantile methodology. Normalised data were analysed to measure fold-change expression. Target sequences for novel candidate miRNAs were identified using R with the Biostrings 2.28.0 package in 3′UTRs of the human genome.
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9

Efficient miRNA Regulation: Transfection Techniques

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Transfection experiments: different transfection techniques will be tested to examine which is more efficient. Lipofection (Lipofectamine 2000, Thermo Fisher Scientific), a non-lipid polymer transfection method (JetPrime, Polyplus-transfection® SA) or electroporation will be tested. Silencing of miRNAs will be accomplished by synthetic monoclonal nucleic acids that specifically bind and inhibit endogenous miRNA molecules (Ambion® Anti-miR ™ miRNA, Thermo Fisher Scientific). Overexpression of miRNAs will be imposed via small, double-stranded RNA molecules (miRNAmimics, Qiagen)
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10

Assessing miR-509-3p Regulation Using CFTR 3'UTR Reporter

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A549 human lung carcinoma cells were purchased from ATCC (Manassas, VA, USA). The cells were maintained in Dulbecco’s modified Eagle’s medium (Gibco Invitrogen, North Andover, MA, USA) with 10% heat inactivated fetal bovine serum (HyClone Laboratories, South Logan, UT, USA) without the addition of antibiotics. A Luciferase construct bearing the 3′UTR of the CFTR gene was used as the miR-509-3p sensitive reporter system. The transfection of the A549 cells with miRNA-mimics (Qiagen, Hilden, Germany) or PNAs was performed with the Attractene Transfection Reagent (Qiagen). Briefly, the cells seeded in 96-well plates were cotransfected with the luciferase reporter construct, miR-509-3p mimic and the PNAs. The luciferase activity level was measured 24 h after transfection using the Dual-Glo Luciferase Assay System (Promega Corporation, Madison, WI, USA). The EnSpire Multimode Plate Reader (Perkim Elmer, Waltham, MA, USA) was used for the luminescence assay using 96-multiwell black plates. The relative reporter activity was obtained by normalization to the Renilla luciferase activity.
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