The largest database of trusted experimental protocols

92 protocols using 3t prisma

1

Simultaneous Multi-Scanner fMRI Hyperscanning

Check if the same lab product or an alternative is used in the 5 most similar protocols
BOLD fMRI data were simultaneously collected from each participant (Patient scanner: Siemens 3T Skyra; Clinician scanner: Siemens 3T Prisma) using a whole-brain, simultaneous multislice, T2*-weighted gradient echo-planar imaging pulse sequence (repetition time = 1,250 ms, echo time = 33 ms, flip angle = 65˚, voxel size = 2 mm isotropic, number of slices = 75, multiband acceleration factor = 5, 624 volumes split into two consecutive scan runs). We decided to keep a designated “patient scanner” and “clinician scanner” rather than randomizing scanner assignment between dyads. This allowed for protocol consistency within patient and clinician groups and facilitated the setup of our hyperscanning infrastructure. In order to maximize patient comfort during scanning, we used the Siemens 3T Skyra for the fibromyalgia patient group, since it has a slightly wider bore compared to the Siemens 3T Prisma.
A T1-weighted high-resolution structural volume (multiecho MPRAGE) was collected to facilitate anatomical localization and spatial registration of individual BOLD fMRI volumes to standard space (Montreal Neurological Institute, MNI152) (repetition time = 2,530 ms, echo time = 1.69 ms, flip angle = 7˚, voxel size = 1 mm isotropic).
+ Open protocol
+ Expand
2

Cervical Spondylosis MRI Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
MRI was obtained on a 3T MR scanner (3T Prisma; Siemens Healthcare, Erlangen, Germany) using a standard spine coil array for radiofrequency reception. Routine clinical MRI scans consisted of T1-weighted and T2-weighted sequences in the sagittal plane and T2-weighted images in the axial orientation. All patients had radiographic evidence of stenosis, including spinal canal narrowing related to advanced cervical spondylosis manifested by a combination of facet arthropathy, ligamentum flavum hypertrophy, and varying degrees of ventral disc-osteophyte compression.
+ Open protocol
+ Expand
3

Diffusion Weighted Imaging Processing Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Participants were scanned on a Siemens 3T Trio (at Indiana University Hospital and Cleveland Clinic) and a Siemens 3T Prisma at the Cleveland Clinic. DWI data were processed in the AFNI (Cox, 1996 (link)) pipeline that included routines in TORTOISE (Pierpaoli et al., 2010 ), FATCAT (Taylor & Saad, 2013 (link)) and FreeSurfer (Fischl, 2012 (link)). Details are presented in the online supplement.
+ Open protocol
+ Expand
4

Multimodal MRI Acquisition Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Diffusion-weighted MRI, functional MRI, and T1-weighted structural images were acquired at the Brown University MRI Research Facility on a Siemens 3T Prisma MRI scanner (Siemens Corp., Erlangen, Germany) equipped with a 32-channel head coil. For each participant, we collected a high-resolution T1-weighted anatomical image (voxel size=1.0 mm3, TR=1900 ms, TE=2.98 ms, FOV=256 mm2) and a 12-minute, 64 direction, diffusion-weighted echo-planar imaging scan (voxel size=1.8 mm3, slices=76, TR=10200 ms, TE=103.0 ms, b=1000 s/mm2, b0=12).
+ Open protocol
+ Expand
5

Multimodal Neuroimaging Protocol for Brain Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images were acquired at the University of Pennsylvania using Siemens 3 T Prisma. 3D T1 images were obtained in sagittal using repetition time (TR) = 2400 ms, echo time (TE) = 2.24 ms, inversion time (TI) = 1060 ms, flip angle = 8 °, matrix = 320 × 320, slices per slab = 208, and slice thickness = 0.80 mm. The rsfMRIs were recorded using TR = 720 ms, TE = 37 ms, flip angle = 52 °, field of view (FOV) = 208 × 208 mm2, matrix = 104 × 104, number of slices = 72, slice thickness = 2 mm, and bandwidth = 2290 Hz/pixel. ASL images were acquired using 1D-accelerated 4-shot 3D stack-of-spirals acquisition with 90 % background suppression, TR = 4250 ms, TE = 9.8 ms, TI = 150 ms, flip angle = 90 °, FOV = 240 × 240 mm2, matrix = 96 × 96, slices per slab = 52, and voxel size = 2.5 × 2.5 × 2.5 mm3. Unbalanced pseudo-continuous labeling with a labeling time of 1.8 s, and post labeling delay of 1.8 s was performed at an optimal location perpendicular to straight segments of the internal carotid and vertebral arteries as determined by time-of-flight angiography. Ten label/control pairs were acquired for signal averaging. Two volumes of M0 images acquired with TR = 6 s and without background suppression were averaged and used to normalize the control-label difference for CBF quantification.
+ Open protocol
+ Expand
6

Functional MRI Acquisition and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Imaging data were acquired using a 3-T MRI scanner (3T Prisma, Siemens Healthcare, Erlangen, Germany) at the Cardiff University Brain Research Imaging Center (CUBRIC). Blood-oxygenation-level-dependent (BOLD) signals during localizer and neurofeedback runs (see Procedure) were measured with a T2*-weighted gradient-echo echo planar imaging (EPI) sequence synchronized to the onset of the stimulus presentation. Functional EPI volumes of 24 slices of 2.5-mm thickness, with 0.5-mm interslice spacing was used (in-plane resolution = 3 mm, TR = 1,500 ms, TE = 30 ms, flip angle = 80°). High-resolution structural images were acquired before the first functional scan using a magnetization-prepared rapid gradient-echo sequence (MPRAGE) T1-weighted image with 172 contiguous sagittal slices of 1-mm thickness (voxel size: 1 × 1 × 1 mm, TR = 7.9 s, TE = 3.0 ms, flip angle = 20°, FoV = 256 × 256 × 172 mm). Turbo-BrainVoyager (TBV) software (Brain Innovation B.V., Maastricht, Netherlands, version 3.2) was used for online preprocessing and analysis of BOLD signals including motion correction with respect to the first volume of the functional localizer and spatial smoothing [4 mm full width at half maximum (FWHM)].
+ Open protocol
+ Expand
7

Structural MRI Acquisition Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
T1-weighted magnetization prepared rapid gradient echo (MPRAGE) structural scans were collected via a Siemens 3T Prisma scanner using a 64-channel head coil (University of Florida site, n = 129) or via a Siemens 3T Skyra scanner using a 32-channel head coil (University of Arizona site, n = 57) (Siemens, Erlangen, Germany). T1- weighted MPRAGE scans were collected with the following parameters at both sites: repetition time (TR) = 1800 ms; echo time (TE) = 2.26ms; flip angle = 8°; field of view = 256mm × 256mm × 176mm; voxel size = 1mm3.
+ Open protocol
+ Expand
8

Hippocampal Formation Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All older participants underwent MRI scanning on 32 channel Siemens 3T Prisma scanners based either at the MRC Cognition and Brain Sciences Unit, Cambridge, or at the Wolfson Brain Imaging Centre, Cambridge, with the same acquisition parameters used at the two scan sites. The scan protocol included whole brain 1 × 1 × 1 mm T1‐weighted MPRAGE (acquisition time 5 min 12 s, repetition time 2300 ms, echo time 2.96 ms) and high‐resolution 0.4 × 0.4 × 2 mm T2‐weighted scans through the hippocampal formation with scans aligned orthogonally to the long axis of the HC (acquisition time 8 min 11 s, repetition time 8020 ms, echo time 50 ms). D.H. collected and extracted the MRI structures. All the scans were acquired within a period of 3 months from the OLT task.
+ Open protocol
+ Expand
9

MRI Acquisition for Healthy Aging Cohorts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Slight variations in the acquisition parameters were made for the HCP-A and HCP-D cohorts to accommodate the unique challenges of working with young and elderly populations (Harms et al., 2018 (link)). HCP-D and HCP-A participants were scanned on a variant of the HCP-YA Connectome scanner, the Siemens 3T Prisma with an 80 mT/m gradient coil and a Siemens 32-channel Prisma head coil. T1w multi-echo MP-RAGE scans were acquired with the following acquisition parameters: voxel size = 0.8 mm isotropic, 4 echoes per line of k-space, FOV = 256 × 240 × 166 mm, matrix = 320 × 300 × 208 slices, 7.7% slice oversampling, GRAPPA = 2, pixel bandwidth = 744 Hz/pixel, TR = 2500 ms, TI = 1000 ms, TE = 1.8/3.6/5.4/7.2 ms, FA = 8°. Motion-induced re-acquisition were allowed for upto 30 TRs. T2w turbo spin echo (TSE) scans were collected from each subject with the following acquisition parameters: voxel size = 0.8 mm isotropic, 4 echoes per line of k-space, FOV = 256 ×240 ×166 mm, matrix = 320 ×300 ×208 slices, 7.7% slice oversampling, GRAPPA = 2, pixel bandwidth = 744 Hz/pixel, TR = 3200 ms, TE = 564 ms, turbo factor = 314. Motion-induced re-acquisition were allowed upto 25 TRs.
+ Open protocol
+ Expand
10

Multimodal MRI Acquisition for Cognitive Neuroscience

Check if the same lab product or an alternative is used in the 5 most similar protocols
MRI data were collected with a Siemens 3 T Prisma scanner, using a 32-channel receiver array head coil. High-resolution structural images were acquired by Magnetization-Prepared Rapid Gradient-Echo (MPRAGE) imaging (TR = 1.9 s, TE = 2.77 ms, TI = 900 ms, flip angle = 9°, 176 sagittal slices, voxel size = 1 × 1 × 1 mm, 256 × 256 matrix in a 256 mm FOV). Functional MRI scans were acquired while the participants were listening to the narrated scripts, using a multi-band Echo-planar Imaging (EPI) sequence (multi-band factor = 4, TR = 1000 ms, TE = 30 ms, flip angle = 60°, voxel size = 2 × 2 × 2 mm, 602 mm-thick slices, in-plane resolution = 2 × 2 mm, FOV = 220 mm). For the diffusion-weighted images (DWIs) b-value was set at 1000 s/mm2 with an acquisition of a reference image (b = 0). 64 directions were scanned, with the phase-encoding gradient applied in the anterior–posterior (AP) direction.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!