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Tb greentm premix extaqtm 2

Manufactured by Roche
Sourced in United States

TB GreenTM Premix ExtaQTM II is a real-time PCR reagent designed for the detection and quantification of target DNA sequences. It contains a proprietary DNA-binding dye, optimized buffer components, and a thermostable DNA polymerase enzyme for reliable and sensitive amplification of target DNA.

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3 protocols using tb greentm premix extaqtm 2

1

Chromatin Immunoprecipitation (ChIP) Protocol

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Approximately 4 × 106 cells were collected for each ChIP reaction. Cross-linked cells were collected according to the instructions, and ChIP lysate was added for ultrasonic treatment to fragment the chromatin. Then, 50 μL of the solution containing cross-linked chromatin fragments was purified using a ChIP kit (Cell Signaling Technology), and 10 μL of the resulting purified DNA was subjected to 1% agarose gel electrophoresis to observe the size of the DNA fragments. The cell lysates of different treatment groups were combined with YY1 (Proteintech) and IgG (negative control; Abcam) for the ChIP assay, and the bound DNA was purified for quantitative analysis by qPCR. TB GreenTM Premix ExtaQTM II was used to perform qRT–PCR analysis on a LightCycler 480 II instrument (Roche), and the ChIP-enrichment rate was calculated according to the experimental results.
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2

Molecular Profiling of Tight Junction and Inflammatory Markers

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Tissues and cells were obtained and lysed in TRIzol. Markers for RT-qPCR were selected: Claudin-1, Occludin-1, Jam-1, ZO-1, MCT-1, SMCT-1, IL-1β, IL-6, IL-8, TNF-α, LFA-1, MCP-1, MKP-1, PP1, PP2, PP2A, PTP1B and SHP2. All mRNA samples were extracted and transcribed into cDNA according to standard protocols (TAKARA, PrimeScript RT Master Mix (Perfect Real Time), RR036A). 5 ng/µL cDNA was prepared with 1.6 µL each of forward and reverse primers (5µM) and 10 µL SYBR Green PCR Master Mix (TAKARA, TB GreenTM Premix Ex TaqTM II (Tli RNaseH Plus, RR820A)) before performing on the LightCycler R 480 Real-Time PCR System (Roche Molecular Systems, Inc. Indiana, USA). The expression of all the target genes was normalized to GAPDH. The relative changes in gene expressions were calculated using the 2−ΔΔCt method. The primers used in the study were shown in Supplementary Table 1.
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3

Quantitative Analysis of lncRNA Expression

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Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. The first strand of mRNA was reverse-transcribed with 2 μg total RNA using the FastKing gDNA Dispelling RT SuperMix Kit, and real-time quantitative polymerase chain reaction was performed using the Super Real Premix Plus Kit (SYBR Green, Tiangen, Beijing, China). TB GreenTM Premix ExtaQTM II was used for qRT–PCR analysis on a LightCycler 480 II instrument (Roche, Merck). GAPDH was used as an internal reference for lncRNAs and other target genes, and the relative level of gene expression was calculated using the 2−ΔΔCT method. All primer sequences are listed in Tables S1 and S2.
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