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5 protocols using ab51252

1

Comprehensive Antibody Panel for Neuronal Characterization

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Rab10 (4262S, Cell Signaling Technology) for immunoblot, Rab10 (ab237703, Abcam) for immunofluorescence, pRab10 for immunoblot (ab230261, Abcam), pRab10 for immunofluorescence (ab241060, Abcam), Hsc70 (ab19136, Abcam), α-Tubulin (SC23948, Santa Cruz Biotechnology), parvalbumin, (NBP2-50036, NovusBio), NeuN (MAB377, Millipore), SATB2 (ab51502 Abcam), calretinin (MAB1568, Millipore), DARPP32 (MAB4230, R&D Systems), ChAT (NBP2-46620, NovusBio), DAT loop (6-8D6 Santa Cruz Biotechnology), tyrosine hydroxylase (TH) (ab76442, Abcam), CD68 (NBP2-33337SS, NovusBio), GFAP (AB5541, Millipore), Olig2 (MABN50 Millipore), KDEL receptor (sc-58774, Santa Cruz Biotechnology), TGN46 (MA3-063, ThermoFisher), LAMP1 (1D4B, DHSB), EEA1 (NBP2-36568, NovusBio), α-Synuclein (610786, BD Transduction Lab), Synuclein (ab51252, Abcam), VAMP2 (104 211, Synaptic Systems), Homer1 (160 006 Synaptic Systems), Rab8a (ab188574).
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2

Profiling PSMD2 Knockdown Effects

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Human breast cancer T47D cells harboring doxycycline-inducible control (T47D-GFP) and shRNA targeting PSMD2 (Rpn1 subunit of the 19S complex) (T47D-760S) were treated with 1 μg/ml of doxycycline for 48 h to induce knockdown of the PSMD2. Cells were then transfected with 4 μg of C-PLoop-HA and Cerulean control plasmid. Twenty-four hours post-transfection, the cells were collected and lysed in modified RIPA buffer containing 50 mM HEPES pH 7.6, 150 mM NaCl, 1% NP40, 0.25% sodium-deoxycholate, 0.26 mM PMSF, 1 mM benzamidine, and 1.4 µg/ml pepstatin. Cell debris was removed by centrifugation at 10,000 × g for 10 min, and the supernatant was collected. Total protein concentration was estimated by Bradford assay, and 30 μg of total protein was loaded for each sample. α-synuclein and p53 levels were detected by anti-α-synuclein (1:500, ab51252, Abcam) and anti-p53 HRP (1:2500, HAF1355, Biotest) antibodies respectively. Band intensities were measured by ImageJ.
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3

Western Blot Analysis of Oxidative Stress Biomarkers

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Samples were separated with SDS–PAGE using 12 or 4–20% gradient gels (Bio-Rad) and transferred on polyvinylidene difluoride (PVDF) membranes. Blots were fixed with 4% paraformaldehyde for 15 min and washed thoroughly with PBS. Afterwards, blots were blocked in 5% non-fat dry milk in TBS-T for 1 h at room temperature and incubated with the following primary antibodies for 12 h at 4 °C: anti-α-Syn (1:1,000 Abcam ab51252), anti-MSRA (1:1,000, Abcam ab16803), anti-MSRB1 (1:200, Abcam ab66061), anti-MSRB2 (1:500, Abcam ab101513), anti-MSRB3 (1:500, Abcam ab88731), anti-TRX (1:1,000, Abcam ab86255), anti-TRXR (1:500, Abcam ab16847) or anti-β-Actin (1:5,000, Abcam ab6276). After washing in PBS and TBS (2 × 5 min each), membranes were incubated with horseradish peroxidase-coupled secondary antibodies for 1 h at room temperature and probed using SuperSignal West Pico or Femto chemiluminescent substrate (Thermo Scientific). Luminescence was detected and quantified on a Bio-Rad Molecular Imager and with the ImageLab software. Primary data and original western blot membranes are shown in Supplementary Figs 8 and 9.
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4

Western Blot Analysis of Protein Complexes

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After separation of protein samples on SDS-PAGE, proteins were transferred to 0.45 µm Immobilon-PVDF membranes (Millipore) pre-activated with methanol in standard Tris-Glycine transfer buffer (pH 8.3) supplemented with 20% methanol for 2 h at 400 mA. Membranes were blocked in 5% skim milk powder in TBS-T for 1 h, followed by incubation with appropriate primary antibodies on an orbital shaker at 4 °C overnight. Membranes were rinsed thoroughly in TBS-T, followed by incubation with appropriate secondary HRP-conjugated antibodies for 1 h on an orbital shaker at room temperature. Membranes were rinsed thoroughly and developed using WesternBright ECL (Advansta) in a MyECL Imager v 2.2.0.1250 (Thermo Scientific) according to the manufacturer’s instructions.
Primary antibodies used for Western blots include anti-HA(R) rabbit (1:6000, ab9110, Abcam), anti-HA(M) mouse (1:1000, ab18181, Abcam), anti-PSMD1 (1:1000, ab2941, Abcam), anti-PSMD2 (1:1000, PAB6715, Abnova), anti-PSMA3 (1:500, sc-58417, Santa Cruz), anti-PSMA1 (1:1000, ab140499, Abcam), anti-FLAG (1:2500, F3165 Clone M2, Sigma), anti-GFP (1:2500, ab290, Abcam), anti-p53 HRP (1:2500, HAF1355, Biotest), anti-α-synuclein (1:500, ab51252, Abcam), anti-GAPDH (1:1000, MAB374, Clone 6C5, Millipore), anti-CBR3 (1:1000, sc-374393, Santa Cruz).
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5

Immunofluorescence imaging of α-Synuclein

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Immunofluorescence images of fixed cells electroporated with reduced or oxidized α-Syn were acquired on a Zeiss LSM ultraviolet confocal microscope. After electroporation, cells were recovered for 5 h at 37 °C, 5% CO2 on poly-L-lysine-coated 25-mm cover slips. Slides were washed with PBS and fixed in 4% paraformaldehyde for 15 min and permeabilized with 0.1% Triton-X/PBS for 3 min. After 3 × 10 min PBS washes, samples were blocked with 0.13% gelatin from cold-water fish skin (Sigma-Aldrich) for 1 h. Slides were incubated for 2 h in 0.13% gelatin with anti-α-Syn antibody (1:500 Abcam ab51252), washed 3 × 10 min with PBS and incubated with anti-Rabbit IgG Atto647 (40839 Sigma-Aldrich, 1:1,000 dilution) for 1.5 h in 0.13% gelatin. Cells were washed 3 × 10 min with PBS and stained with 2 μg ml−1 4,6-diamidino-2-phenylindole (Invitrogen) in PBS for 15 min. Images were acquired at × 60 magnification.
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