RT-qPCR was performed using a Bio-Rad
CFX384 real-time PCR system. PCR reaction mixture (20 μl) was prepared with 20 ng of cDNA, 10 μl of
2X Real-Time PCR Master Mix For SYBR® Green I (BioFACT, Korea), and 10 pmoles of each forward and reverse primer. The reaction condition was as follows: 15 min at 95 °C and 40 cycles of 20 s at 95 °C, 30 s at 57 °C, and 20 s at 72 °C, and the melting curve was generated by raising the temperature from 55 to 95 °C. Two reference genes,
EF1α (FGSG_08811) and
UBH (FGSG_01231), were used as internal controls (Kim and Yun, 2011 ; Son et al., 2013 (
link)). The experiment was conducted with 3 biological replicates. The obtained data were analyzed using Bio-Rad
CFX Manager 3.0 software. Semi-quantitative RT-PCR was performed with a 20 μl reaction mixture containing 20 ng of cDNA,
TaKaRa Taq™ (Takara Bio, Japan), and 10 pmoles of each primer set. The reaction condition was as follows: 3 min at 95 °C and 25 or 30 cycles of 25 s at 95 °C, 30 s at 57 °C, and 20 s at 72 °C, and the final extension was conducted at 72 °C for 7 min. Amplified PCR product was visualized on 1% agarose gel containing ethidium bromide under UV light after gel electrophoresis. All primer sets are listed in Table S2.
Kwon G., Yu J, & Kim K.H. (2023). Identifying transcription factors associated with Fusarium graminearum virus 2 accumulation in Fusarium graminearum by phenome-based investigation. Virus Research, 326, 199061.