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65 protocols using dfc450 camera

1

Histomorphologic Liver Assessment Protocol

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Liver tissue for histomorphologic examination was taken from the medial lobe of each animal, fixed in 10% neutral-buffered formalin for 24 h, then placed in 70% ethanol until paraffin embedding and hematoxylin and eosin (H&E) staining. Masson Trichrome staining was also performed using the Masson Trichrome Kit from Sigma-Aldrich (St. Louis, MO) per manufacturer's instructions. All slides were imaged with a Leica DM4000B microscope, DFC450 camera, and Leica Application Suite software (Leica Microsystems, Wetzlar, Germany). Sections were examined by light microscopy by a board certified blinded veterinary pathologist (Burkhardt et al., 2011 (link)). Liver necrosis, inflammation, fibrosis, lipid accumulation, and biliary hyperplasia were scored. The scoring criteria were as follows: 0 (no lesion), 1 (<10% lesion; minimal), 2 (10–25% lesion; mild), 3 (25–40% lesion; moderate), 4 (40–50% lesion; marked), and 5 (>50% lesion; severe). Representative histology images were acquired with a Leica DM4000B microscope, DFC450 camera, and Leica Application Suite software (Leica Microsystems).
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2

Immunohistochemical Detection of Protein Targets

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The tissue sections were heated in citrate buffer in a microwave oven (650 W) for 20 min, and blocked in 10% FCS, 0.3% TritonX-100 in TBS for 1 h at RT. The rabbit anti-FLAG primary antibody (F7425, Sigma) was incubated overnight at 4°C, at a dilution of 1:100 in blocking solution.
After incubation with the primary antibodies, the slides were washed 3 times with TBS, and incubated with the HRP-conjugated goat anti-rabbit (ab6721, AbCam) or anti-rat (ab6734, AbCam) secondary antibody for 1 h at a dilution of 1:200 in TBS, supplemented with 1% BSA. Immunocomplexes were visualized with the 3,3’-diaminobenzidine (DAB) substrate kit (SK-4100, Vector Laboratories Inc., Burlingame, CA, USA), according to the instructions of the manufacturer. Sections were counterstained with hematoxylin solution (Sigma-Aldrich) and mounted with Mowiol.
Images were acquired with a Leica DM5500B microscope and Leica DFC450 camera (Leica Microsystems, Wetzlar, Germany).
Micrographs taken at 10X magnification were deconvoluted and quantification of the staining was performed with ImageJ software (using the IHC Profiler plugin). The intensity of the staining is calculated as % of pixel per area.
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Quantitative Evaluation of Wound Healing

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Ten different isolated fields from each segment were measured for quantitative evaluation using a Leica DML B2/11888111 microscope equipped with a Leica DFC450 camera (Leica Microsystems, Wetzlar, Germany). Image J software version K1.45 was used to estimate the measured variance. H&E and Mallory’s trichrome were used to collect data.

Wound closure % = (initial wound size−wound at the time of taking the image)/initial wound size) × 100 [61 (link)] mean area percentage of collagen fibers with sections stained with Mallory’s Trichrome (×200).

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4

Chromosomal Analysis of Mosquito Ovaries

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Half-gravid females were sampled in November 2016 (Table S1) in forest sites where we previously found specimens belonging to the unspecified taxon. Females were collected by HLC and fed to complete their blood-meal. Mosquitoes were allowed to develop follicles for 25 h at field temperature. Then, ovaries were dissected and stored in Carnoy’s fixative solution (100% ethanol: glacial acetic acid, 3:1 by volume). At the CIRMF, ovaries were squashed in a drop of 50% propionic acid to obtain the polytene chromosomes62 . The banding patterns of polytene chromosomes were examined using a Leica DM2000 microscope equipped with a Leica DFC 450 camera system (Leica Microsystems GmbH, Wetzlar, Germany). Chromosomal arms and inversions were recorded and scored according to the An. gambiae chromosome map63 (link).
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5

Multimodal Imaging of Microneedle Arrays

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A Nikon A1R Ultra-Fast Spectral Scanning Confocal Microscope (Melville, NY, USA) was used to inspect the MN patches loaded with FITC-dextran. To image the MN, we used 20× air and 63× oil immersion objectives, and we detected the signal using a resonant scanner. Digital three-dimensional (3D) reconstructions were generated using a Nikon NIS Elements Acquisition Software based on approximately 1000 confocal slides per 3D image.
A JEOL 5600LV scanning electron microscope (Peabody, MA, USA) was used to image the MN, which had been previously coated with gold and palladium in a Hummer 6.2 Sputter Coating System (Anatech, Hayward, CA, USA). Images of the MN arrays for designated experiments were taken using a Leica M165 C stereo microscope with a coupled Leica DFC450 camera (Leica Microsystems, Buffalo Grove, IL, USA).
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6

Secretome Analysis of Human and Rat prASC

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To gain insights into functional changes that might occur when different culturing strategies are applied to human and rat prASC, we submitted the lists of proteins from each human and rat prASC culturing strategy to Metascape [34] . For each secretome, Metascape carried out an analysis of pathway enrichment clusters from many ontology sources. The most statistically significant term within a cluster is then chosen (by Metascape) for representation. We first submitted the list of proteins of the normoxic secretomes from both human and rat prASC to Metascape. We used a list that and Alizarin Red staining were evaluated with a light microscope (Leica DM2000 LED microscope with a Leica DFC 450 camera (Leica Microsystems B.V., Amsterdam, The Netherlands)). Phalloidin-FITC staining was evaluated with an immunofluorescence microscope (EVOS Cell Imaging System, Invitrogen).
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7

Quantitative Fluorescence Microscopy Protocol

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ANOVA (one-way analysis of variance) was applied followed by Dunnett’s multiple comparison tests for statistical calculations. A burst of cellular images was taken by Leica DFC450 camera (Leica Microsystems GmbH, Wetzlar, Germany) at constant exposure time, gain, color saturation and gamma adjustment. CTCF (corrected total cellular fluorescence) was calculated in the ImageJ software (NIH, Bethesda, MD, USA). Mean cellular fluorescence got subtracted by mean background (non-cellular) fluorescence. Specific statistical statements are given in respective figure legends.
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8

Immunofluorescence Staining of TTFields-Treated Cells

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Subsequent to TTFields treatment, cells were washed three times with PBS and fixed in pre-chilled methanol for 20 min at −20 °C. Next, cells were washed again and blocked in 5% donkey serum (DS, Abcam, Cambridge, UK) diluted in PBS for 1 h at room temperature. The cells were afterwards incubated with the primary antibodies mouse anti-claudin-5 conjugated to Alexa Fluor 488 (1:500, Thermo Scientific, Cat. No. 352588), mouse anti-zonula occludens-1 conjugated to Alexa Fluor 488 (1:500, Thermo Scientific, Cat. No. 339188), and rabbit anti-PECAM-1 (1:500, Novus Biologicals, Centennial, CO, USA, Cat. No. NB100-2284) in 1% bovine serum albumin (BSA)/PBS with 5% DS overnight at 4 °C. On the following day, the cells probed with rabbit anti-PECAM-1 were probed with the secondary antibody anti-rabbit Alexa Fluor 555 (1:400 in 1% BSA/PBS with 5% DS, Invitrogen, Cat. No. A-21429) for 1 h at room temperature. In addition, the cells were then washed three times with PBS. Finally, the cover slips were mounted on glass microscope slides using Fluoroshield mounting medium with DAPI (Abcam), allowed to dry, and subsequently viewed under the microscope. Five representative fields of view per slide were photographed with the LEICA DMI 3000 B microscope, LEICA DFC 450 camera, and LAS V4.5 software (all Leica Microsystems, Wetzlar, Germany) with standardized settings at 40× magnification.
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9

Histological Analysis of Aged and Denervated Muscles

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EDL muscles from aged and aged-trained mice and those form control, denervated (15 days from nerve crush) and re-innervated (45 days from nerve crash) rats were sectioned both transversally and longitudinally. Images were acquired using a Leica DMLB microscope (Leica Microsystem, Vienna, Austria) connected to a Leica DFC450 camera (Leica Microsystem, Vienna, Austria).
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10

Immunohistochemical Staining of MRP2 in Liver

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Immunohistochemical staining for MRP2 was performed on formalin-fixed, paraffin-embedded samples. Liver sections were deparaffinized in xylene and rehydrated in ethanol, followed by antigen retrieval with Tris-EDTA buffer pH 9.0. Endogenous peroxidase activity was blocked with 0.3% (v/v) hydrogen peroxide in methanol for 20 minutes. MRP2 staining was performed by overnight incubation (4°C) with anti-MRP2, M8316 (Sigma Aldrich, St. Louis, MO) at a dilution of 1:250, followed by the MACH3 staining kit (Biocare Medical, Concord, CA) per the manufacturer’s protocol. All slides were imaged with a Leica DM4000B microscope and a DFC450 camera (Leica Microsystems, Buffalo Grove, IL).
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