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Autoflex maldi tof mass spectrometer

Manufactured by Bruker
Sourced in United States, Germany

The Autoflex MALDI-TOF mass spectrometer is a laboratory instrument designed for high-resolution mass analysis. It utilizes matrix-assisted laser desorption/ionization (MALDI) technology to ionize and detect a wide range of biomolecules, including proteins, peptides, and other macromolecules. The Autoflex MALDI-TOF provides accurate mass measurements and data analysis capabilities for various applications in life science research and analytical chemistry.

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26 protocols using autoflex maldi tof mass spectrometer

1

Analytical Characterization of DDSQ-based Block Copolymers

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FTIR spectra were recorded at room temperature at a resolution of 4 cm−1 within the range from 4000 to 400 cm−1 from 32 scans, using a Nicolet 320 FTIR spectrometer and the typical KBr pellet method. NMR spectra were recorded using an INOVA 500 instrument with CDCl3 or DMSO-d6 as the solvent. The molecular weights of the DDSQ-based PS block copolymers were evaluated from their 1H NMR spectra; their polydispersity indices (PDIs) were determined using GPC (Waters 510 apparatus) where the molecular weight calibration was used by PS standard and MALDI-TOF mass spectrometry (Bruker Daltonics Autoflex MALDI-TOF mass spectrometer). The thermal properties of the DDSQ-based block copolymers were determined through DSC using a TA Q-20 instrument; the sample was placed in an aluminum pan and heated at a rate of 20 °C min−1 from room temperature to 250 °C under a N2 atmosphere (50 mL/min) after the sample was cooled quickly to −90 °C from the first scan. TEM images were recorded using a JEOL 2100 microscope (Japan) operated at 200 kV; ultrathin films were prepared using a Leica Ultracut microtome featuring a diamond knife and placed on a Cu grid coated with a carbon film. The P4VP-b-PS-DDSQ-PS-b-P4VP thin film was imaged after staining with I2 to display its P4VP segments; the PVPh-b-PS-DDSQ-PS-b-PVPh thin film was stained with RuO4 to display its PVPh segments.
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2

Spectroscopic Characterization of Chemical Compounds

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UV spectra were recorded on a Shimadzu UV2301 UV spectrometer in scanning mode from 190 to 360 nm. IR spectra were recorded with a Thermo Scientific Nicolet 6700 Fourier transform infrared spectrometer equipped with a Smart iTR ATR sampling accessory. COSY, HSQC, HMBC, and ROESY spectra were recorded on a Bruker Avance AV800 spectrometer equipped with a 5 mm RT TXI probe, while 1H, DEPTQ, 15N HSQC, and 15N HMBC were recorded on a Bruker Avance AVII900 spectrometer equipped with a 5 mm CPTCI probe. Chemical shifts in all NMR spectra were referenced to the residual solvent peak (MeOH-d4 and MeOH-d3δH 3.31 and δC 49.15). HMBC spectra were acquired with an average 3JCH of 8 Hz. The 15N HSQC spectrum was acquired with a 1JNH of 90 Hz, and the 15N HMBC spectrum was acquired with a 3JNH of 6 Hz. Extract and pure compound HRESIMS spectra were recorded on a Shimadzu LC-IT-ToF mass spectrometer, in situ, and media MS spectra were recorded on a Bruker AutoFlex MALDI-ToF mass spectrometer. MS/MS spectra were recorded on a Bruker Impact II LC-Q-ToF mass spectrometer. MS/MS spectra were obtained with a dissociation energy of 60 eV with stepping factors of 0.2, 0.8, and 1.
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3

Bacterial Identification using MALDI-TOF MS

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Isolates were sub-cultured twice on MHA at 30 °C for 24 h. Then approximately 100 μg of the bacterial colony were directly transferred to the MALDI target spot. Followed by drying at room temperature and overloading with 1uL of matrix solution (10 mg/ml a-cyano-4-hydroxycinnamic acid in 50% acetonitrile and 2.5% trifluoroacetic acid), each measurement was performed in two replications. MS analysis was carried out on an Autoflex MALDI-TOF mass spectrometer using Flex Control 3.4 software (Bruker Daltonics, Germany). Soil isolates with a valid MALDI-TOF MS score of 2 were undoubtedly assigned to the genus/species level.
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4

MALDI-TOF Analysis of Tag-free SPS-1

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After dialysis against 10 mM ammonium acetate, pH 7.5, 30 μM tag-free SPS-1 was mixed with sinapinic acid matrix at a ratio of 1:1. The resulting sample was analyzed using a Bruker AutoFlex MALDI-TOF mass spectrometer.11 (link)
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5

Synthesis of GzmB Substrate Peptides

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FITC-labelled GzmB substrate peptides ((FITC)AIEFDSGc; lower case letters = d-form amino acids) were synthesized by Tufts University Core Facility and used for in vivo formulations. FITC-labelled GzmB substrate peptides with internal quencher ((5-FAM)aIEFDSG(K-CPQ2)kkc) were synthesized by CPC Scientific and used for all in vitro activity assays. Quenched fluorescent peptides for screening candidate substrates ((5-FAM)-{substrate}-(K-DABCYL)-amide)) were synthesized by Genscript or in-house, as described below. Mass-barcoded peptides for multiplexed urinary monitoring (eGVndneeGFFsAr(ANP)GG-{substrate}-GGC, ANP = 3-amino-3-(2-nitrophenyl)propionic acid) were synthesized in-house using the Liberty Blue Peptide Synthesizer (CEM). The peptide synthesis scale used was 0.025 mmol, and low-loading rink amide resin (CEM) was used. Amino acids (Chem-Impex) were resuspended in DMF (0.2 M), as were all synthesis buffers. Activator buffer used was diisopropylcarbodiimide (DIC; Sigma) (0.25 M) and the activator base buffer was Oxyma (0.25 M; CEM) while the deprotection buffer was piperidine (20% v/v; Sigma) supplemented with Oxyma (0.1 M). Crude peptides were purified on 1260 Infinity II HPLC system (Agilent) until a purity of 80% was achieved. Peptide mass and purity were validated by LC-MS (Agilent) and Autoflex MALDI-TOF mass spectrometer (Bruker).
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6

Characterization of Functionalized Magnetic Nanoprobes

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Agilent 1200 high performance liquid chromatography (Agilent Technologies, Inc., Beijing, China), Bruker Avance III 400 HD NMR spectrometer (Bruker, Beijing, China) and Bruker Autoflex MALDI-TOF mass spectrometer (Bruker, Beijing, China) were used to purify and identify the target product, respectively. Bruker TENSOR-27 Infrared Spectroscope (Bruker, Beijing, China), UV-2550 UV–Vis spectrophotometer (Shimadzu Company, Kyoto, Japan) and IONTOF time of flight secondary ion mass spectrometer (ToF-SIMS V) (IONTOF, Munster, Germany) were used to characterize functionalized magnetic nanoprobes. Quantitative mass spectrometry analysis of proteins was performed on a Waters Xevo-G2-Q-TOF spectrometer (Waters, Milford, MA, USA), which was coupled to a Dionex nano-LC3500 System (Thermo Fisher Scientific (China) Co., Ltd., Shanghai, China). SYNERGY HIM Microplate reader (Bio Tek, Winowski, VT, USA) was used to measure the biological activity of baicalin and modified baicalin.
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7

Synthesis and Purification of Lipo-α/γ-AA Hybrid Peptides

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Briefly, the lipo-α/γ-AA hybrid peptides sequences were synthesized following the standard solid phase peptide synthesis protocol. For every coupling step, 20% Piperidine in DMF was first used to remove the Fmoc protecting group, then 1.5 equivalent of building blocks/Nα-Fmoc-Nε-Boc-L-lysine/palmitic acid, 4 equivalent of HOBT (1-hydroxybenzotriazole monohydrate) and DIC (diisopropylcarbodiimide) in DMF were added to react for 4 h. The assembled sequences were cleaved from the amide resin in 50:48:2 TFA/DCM/TIS (triisopropylsilane) for 2 h. The solvent was removed, and the peptide sequences were purified on a Waters HPLC system monitored at 215 nm (Gradient: Solvent B (acetonitrile) increases to 100% over a 40 min period in Solvent A (water)). The potential fractions were collected and confirmed by Bruker AutoFlex MALDI-TOF mass spectrometer (matrix used: α-Cyano-4-hydroxycinnamic acid) before they were lyophilized.
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8

MALDI-TOF Sample Preparation by Dried Droplet Method

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The dried droplet method was used to prepare a sample for MALDI-TOF. Briefly, a 1 μL sample was mixed with 1 μL matrix (7:3 v/v α-cyano-4-hydroxycinnamic acid(α-CHCA) and formic acid was applied to a MALDI plate and air-dried. The mass spectra of samples were acquired using an autoflex MALDI-TOF mass spectrometer (Bruker Daltonics Inc., Billerica, MA, USA). Mass spectra were obtained in positive mode, and all the spectra were processed with flex analysis software (Bruker Daltonics Inc.).
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9

Genetic Mapping of Hearing Loss in Mice

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BALB/c-Chd7+/Looper mice were crossed to C57BL/6 and the resulting F1 offspring were ABR-tested at 8 weeks of age. Those with a click ABR threshold above 40 dB SPL were backcrossed to C57BL/6 to generate 156 F1N1 offspring. These were ABR-tested at 8 weeks of age and liver DNA isolated as described [20] (link). Twenty-one affected F1N1 mice were genotyped for 660 SNPs spaced at 5–10 Mb intervals throughout the genome using the iPLEX Gold method [21] (link), the MassARRAY System (Sequenom, San Diego, CA, USA) and an Autoflex MALDI-TOF mass spectrometer (Bruker, Billerica, MA, USA) at the AGRF. Haplotypes were constructed and regions of heterozygosity identified using Excel v 14.3.4 software (Microsoft, Redmond, WA, USA). F1N1 mice were genotyped for more finely spaced SNPs on chromosome 4 using the Amplifluor SNPs HT genotyping system FAM-JOE (Merck Millipore, Kilsyth, VIC, Australia) and the primers listed in Table S1. Results were visualized and genotypes assigned using assayauditorEP.xls (Merck Millipore) and excel v 14.3.4 software (Microsoft).
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10

Conjugation of BSA and TFV

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20mg of BSA and 20mg of KLH were each dissolved in 2mL of phosphate buffer saline (PBS). 4mL of 5mg mL−1 sulfo-SMCC in PBS was added to each protein solution. The samples were incubated for 1 hour at room temperature while rotating before being desalted into PBS. 50mg of TFV-SH was dissolved in 500μL methanol and added to each sample before being incubated 2 hours at room temperature while rotating. The samples were desalted into PBS. About 300μL of the BSA-TFV sample was then desalted into pure water and conjugation was confirmed by matrix-assisted laser desorption/ionization - time of flight (MALDI-TOF) and acrylamide gel electrophoresis. Mass measurements of BSA-TFV were taken in a Bruker Autoflex MALDI-TOF Mass Spectrometer with a sinapinic acid double layer matrix set to linear positive mode.
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