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3 protocols using rabbit anti pabp

1

Antibodies for ADAM15 Characterization

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Several antibodies directed against the extracellular part ADAM15 were used: a goat polyclonal (# AF935) and a mouse monoclonal (# mab945) from R&D Systems. Rabbit anti-ADAM15 (cytoplasmic domain, # ab84834), rabbit anti-PABP (# ab21060), rabbit anti-tubulin (# ab134185) and rabbit anti-calnexin antibody (# ab22595) from Abcam. Mouse anti-CD25 (# 174–820) from Ancell-Enzo Life Sciences GmbH. Mouse anti-puromycin (# MABE343, clone 12D10), mouse anti-myc antibody, (# 05–724), rabbit anti-alpha5 integrin (# AB1921) from Merck Millipore. Rabbit anti-FAK (# AHO0502) was from Invitrogen. Anti-Glutathion-S-Transferase peroxidase conjugate (# A7340) from Sigma-Aldrich.
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2

Immunofluorescence Analysis of Stress Granules

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Cells growing on glass-bottom dishes (ibidi; 81156) were fixed in 4% PFA for 5 min at room temperature, permeabilized with 0.1% TBST, blocked in 3% BSA, and then incubated with one of the following primary antibodies at 4°C overnigh t: mouse anti-FLAG (also recognizes the “DDK” tag) (Sigma Aldrich; F3165), mouse anti-G3BP1 (BD Biosciences; 611126), chicken anti-GFP (Abcam; ab13970), goat anti-TIA1 (Santa Cruz Biotechnology; sc-1751), rabbit anti-TIAR (Cell Signaling; 8509S), goat anti-eIF3η (Santa Cruz Biotechnology; sc-16377), rabbit anti–TDP-43 (Proteintech; 12892–1-AP), rabbit anti-PABP (Abcam; ab21060), rabbit anti-HA (Cell Signaling; 3724). Cells were then incubated with secondary antibodies conjugated to Alexa-488, −555 or −647 (Invitrogen), and mounted with ProLong Gold Antifade Reagent with DAPI (Invitrogen; P36931). To detect endogenous ULK1 and ULK2, the signal was amplified using Alexa Fluor 488 Tyramide SuperBoost Kit (Thermo Fisher Scientific; B40941) per the manufacturer’s instructions. Quantification of cells with stress granules was performed as previously described (Buchan et al., 2013 (link)).
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3

Immunofluorescence Staining of Polyglutamine Proteins

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Cells were fixed with paraformaldehyde (4% in PBS) for 20 min, followed by permeabilization (0.2% Triton X-100 in PBS, 10 min) and blocking (3% bovine serum albumin in 0.2% Triton X-100 in PBS, 10 min). Cells were incubated in primary antibody for 2 h at room temperature (Mouse anti-polyQ (Millipore, #MAB1574, 1:50), Rabbit anti-HTT (Cell Signaling, #5656, 1:200), Rabbit anti-G3BP1 (MBL, #RN048PW, 1:500), Mouse anti-G3BP1 (Abcam, #56574, 1:500), Rabbit anti-PABP (Abcam, #21060, 1:400)). Then, the cells were washed with 0.2% Triton-X/PBS and incubated with secondary antibody (Alexa Fluor 488 Goat anti-Mouse (ThermoFisher Scientific, #A11029, 1:500), Alexa Fluor 568F(ab′)2 Fragment of Goat Anti-Rabbit IgG (H + L) (ThermoFisher Scientific, #A-21069, 1:500), or Alexa Fluor 594 Goat Anti-Rabbit IgG (H + L) (ThermoFisher Scientific, #A-11037, 1:500)) and Hoechst 33342 (Life Technologies, #H3570, 1:1000) for 1 h at room temperature. PBS and distilled water washes were followed and then the cover slips were mounted on Mowiol (Sigma, #324590).
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