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3 protocols using tnfα mab11

1

Fluorophore-conjugated antibodies for flow cytometry

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Fluorophore-conjugated murine antibodies were purchased from eBioscience, including antibodies specific for CD8a (53–6.7; catalog #48-0081-80), Thy1.1 (HIS 51; 25–0900-82), Tim3 (RMT3-23; 14–5870-81), Lag3 (ebioC9B7W; 12–2231-81), CD137 (17B5; 17-1370-80), KLRG1 (2F1; 175893–81), and CD25 (PC 61.5; 17–0251-81). Other antibodies to FasL (K10; 106805), vβ9 (MR10-2; 553201), CD69 (H1.2F3; 104502), CD127 (A7R34; 135013), CD80 (16-10A1; 553768), CD86 (GL-1; 105011), IL-2 (JES6-5H4; 503807), IFNγ (XMG1.2; 505809), TNFα (Mab11; 502913), Bax (6A7; 633801), and Bcl-2 (10C4; 633507) were purchased from Biolegend. 7AAD (A1310) and other antibodies were purchased from BD Biosciences, including Fas (Jo2; 563647), Thy1.2 (53–2.1; 561616), CD103 (M290; 557495), purified rat anti-mouse CD16/CD32 (2.4G2; 12–4875-80), PD-1 (J43; 11–9985-81), and Vβ8.1/8.2 (553185). Antibodies against pAKT (S473; D9E; 5315S) were purchased from Cell Signaling Technology. Anti-Eomes (DAN11 mag; 12–4875-80) and the LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (L34957) were purchased from ThermoFisher. For FasL detection, Panc1 cells were treated for 24 h with 3 µg/ml Batimastat (BB-94; ab146619) purchased from Abcam. Flow cytometry data were acquired on a BD FACS Canto II instrument or LSR II and analyzed with Flowjo v9 software.
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2

In Vitro Cytotoxicity Assay of EV-DNTs and CAR4-DNTs

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Target cells were labeled with 2 µM PKH26 fluorescent dye (Sigma) according to the manufacturer’s instruction and cocultured with EV-DNTs and CAR4-DNTs in a 96-well plate at various effector-to-target ratios for 2 hours or 24 hours at 37°C. Subsequently, cells were stained with annexin V, and apoptosis of the target cells was analyzed by flow cytometry. Per cent specific killing was calculated using the formula: %AnnexinV+withDNT%AnnexinV+withoutDNT100%AnnexinV+withoutDNT×100 as previously described. For transwell assays, an HTS Transwell 96-well permeable support (Sigma) with 0.4 µm pore size was used. For blocking assays, anti-CD18 (TS1/18, BioLegend), NKG2D (1D11, BioLegend), DNAM-1 (DX11, BD Bioscience), TNF-α (MAb11, BioLegend), IFN-γ (MD-1, BioLegend), TRAIL (RIK-2, BioLegend), and FasL (NOK-1, BioLegend) antibodies or immunoglobulin 1 (IgG1) isotype control (QA16A12, BioLegend) was added at 10 µg/mL. For blocking assays with concanamycin A (CMA), EV-DNTs or CAR4-DNTs were treated with CMA (100 nM; Sigma) or dimethyl sulfoxide (DMSO) for 30 min prior to use for in vitro cytotoxicity assay.
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3

Immune Cell Characterization Protocol

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RPMI 1640 (31870074) was purchased from ThermoFisher Scientific. Hyclone fetal bovine serum (FBS) was obtained from Fisher Scientific. The following anti-human antibodies were purchased from Biolegend: CD62L (DREG-56), CD3 (OKT3), CD8 (HIT8a), HLA-A2 (BB7.2), CD80 (2D10), CD86 (IT2.2), CD40 (5C3), CD69 (FN50), 4-1BB (4B4-1), CD107 (H4A3), TNFα (Mab11) and anti-mouse TCRβ (Η57–97). The following anti-human antibodies were purchased from BD Bioscience: CD45RA (HI100), CD4 (RPA-T4), and CD11c (B-ly6), CD14 (MΦP9) and PD-1 (EH12.2H7). Nivolumab (Ab00791-13.12) was obtained from Absolute Antibody. The following anti-human antibodies were purchased from eBioscience: CD83 (HB15e), IFNγ (4S.B3) and PDL-1 (MIH1). HLA-A*0201 with 9V was generated and folded in house. HLA-DPB1*04:01 biotinylated monomers were obtained from the NIH tetramer facility. NY-ESO-9V157-165 (SLLMWITQV), NY-ESO-4D157-165 (SLLDWITQV), NY-ESO-6T157-165 (SLLMWTTQV) and NY-ESO-9L157-165 (SLLMWITQL), MAGE-A3243-258 (KKLLTQHFVQENYLEY), NY-ESO161-180 (WITQCFLPVFLAQPPSGQRA) and HIV p17 GAG77-85 (SLYNTVATL) were purchased from GeneScript with >95% purity and resuspended in DMF at 1 mg/ml and stored at −20°C.
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