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2 protocols using modified dna oligonucleotides

1

Nanomaterial Cell Labeling Protocol

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Staple
strands, handle-extended staple strands,
modified DNA oligonucleotides, and fluorescently modified DNA oligonucleotides
were obtained from Integrated DNA Technologies. The p7560 scaffold
for the nanorod and M13mp18 scaffold for the rectangle were obtained
from Eurofins. Monoclonal antibodies anti-PD1 (kindly provided by
Aduro Biotech, hPD1.27.C4, batch: 18-FJ8381), Cetuximab (Erbitux,
Merck), and Trastuzumab (Herceptin, Roche) were used for cell labeling.
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2

Fluorescently-labeled Antibody Conjugation

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Modified DNA oligonucleotides were purchased from Integrated DNA Technologies. Alexa488 (Alexa Fluor 488 NHS Ester, catalog number: A20000) was purchased from Thermo Fisher Scientific. Cy3 (Cy3 NHS Ester, catalog number: PA13101) and Cy5 (Cy5 NHS Ester, catalog number: PA15101) were purchased from GE Healthcare Life Sciences. COS-7 cells were purchased from Korean Cell Line Bank. Anti-tubulin antibody (catalog number: ab6160) was purchased from Abcam. Anti-Tom20 antibody (sc-11415) was purchased from Santa Cruz Biotechnology, Inc. Donkey anti-rabbit IgG antibody (catalog number: 711-005-152) and donkey anti-rat IgG antibody (catalog number: 712-005-153) were purchased from Jackson ImmunoResearch Laboratories, Inc. Carboxyl latex beads (catalog number: C37281) were purchased from Thermo Fisher Scientific. The docking strands were conjugated to the secondary antibodies using Antibody-Oligonucleotide All-in-One Conjugation Kit (catalog number: A-9202-001) purchased from Solulink. Paraformaldehyde (catalog number: 1.04005.1000) was purchased from Merck. Glutaraldehyde (catalog number: G5882), Triton X-100 (catalog number: T9284), and Bovine Serum Albumin (catalog number: A4919) were purchased from Sigma-Aldrich.
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