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Amvn viscometer

Manufactured by Anton Paar
Sourced in Switzerland

The AMVn viscometer is a laboratory instrument manufactured by Anton Paar that measures the kinematic viscosity of liquids. It utilizes the principle of falling ball viscometry to determine the viscosity of a sample. The AMVn viscometer provides precise and reliable viscosity measurements.

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7 protocols using amvn viscometer

1

Characterizing Mad1-Bub1 Complex Formation

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Mad1CTD was mixed with Bub1CD1 peptide to give final concentrations of 20 µM Mad1CTD with either 20 or 40 µM Bub1CD1 in 20 mM HEPES pH 7.5, 100 mM NaCl, 1 mM TCEP. Samples were loaded into 12 mm 6‐sector cells, placed in an An50Ti rotor and centrifugated at 10,200, 12,200 and 21,000 rpm at 20°C until equilibrium had been reached using an Optima XL‐I analytical ultracentrifuge (Beckman). The data were analysed in SEDPHAT 15.2b (Schuck, 2003 (link)). The partial‐specific volumes (v‐bar) were calculated using Sednterp (Cole et al,2008 (link)). The density and viscosity of the buffer were determined with a DMA 4500M density meter (Anton Parr) and a AMVn viscometer (Anton Paar). Data were plotted with the program GUSSI (Brautigam, 2015 (link)).
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2

Analytical Ultracentrifugation of CCAN–Cenp-A Nucleosome

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Uncross-linked and BS3 cross-linked CCAN–Cenp-ANuccomplex at approximately 1 mg/mL in 10 mM Hepes (pH 7.5), 80 mM NaCl, 1 mM
EDTA and 0.5 mM TCEP were subjected to velocity sedimentation at 40,000 rpm
at 4 ˚C in an An50Ti rotor using an Optima XL-I analytical
ultracentrifuge (Beckmann). The data were analysed in SEDFIT 16.1 35 (link) using a c(s) distribution
model. The partial-specific volumes (v-bar) were calculated using Sednterp
(v20130813 beta) (Dr Thomas Laue, University of New Hampshire). The density
and viscosity of the buffer were determined with a DMA 4500M density meter
(Anton Parr) and an AMVn viscometer (Anton Paar). Data were plotted with the
program GUSSI 36 (link).
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3

Analytical Ultracentrifugation of CCAN–Cenp-A Nucleosome

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Uncross-linked and BS3 cross-linked CCAN–Cenp-ANuccomplex at approximately 1 mg/mL in 10 mM Hepes (pH 7.5), 80 mM NaCl, 1 mM
EDTA and 0.5 mM TCEP were subjected to velocity sedimentation at 40,000 rpm
at 4 ˚C in an An50Ti rotor using an Optima XL-I analytical
ultracentrifuge (Beckmann). The data were analysed in SEDFIT 16.1 35 (link) using a c(s) distribution
model. The partial-specific volumes (v-bar) were calculated using Sednterp
(v20130813 beta) (Dr Thomas Laue, University of New Hampshire). The density
and viscosity of the buffer were determined with a DMA 4500M density meter
(Anton Parr) and an AMVn viscometer (Anton Paar). Data were plotted with the
program GUSSI 36 (link).
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4

Glucose Impact on Electrolyte Viscosity

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The viscosity of electrolyte solution with increasing concentrations of glucose was measured with an AMVn viscometer (Anton Paar) apparatus at room temperature (~22 °C).
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5

Sedimentation Equilibrium Analysis of Biomolecular Complexes

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Sedimentation equilibrium experiments were carried out in a buffer of 20 mM HEPES pH 7.5, 100 mM NaCl and 1 mM TCEP. Samples were loaded into 12 mm six-sector cells, placed in an An-50Ti rotor and centrifugated at 10,200, 12,200 and 21,000 rpm at 20 °C until equilibrium had been reached using an Optima XL-I analytical ultracentrifuge (Beckman). The data were analysed in SEDPHAT 15.2b68 (link). The partial-specific volumes (v-bar) were calculated using Sednterp69 (link). The density and viscosity of the buffer were determined with a DMA 4500 M density metre (Anton Parr) and an AMVn viscometer (Anton Paar). Data were plotted with the program GUSSI70 .
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6

Analytical Ultracentrifugation for Protein Characterization

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Experiments were conducted in a ProteomeLab XL-I analytical ultracentrifuge (Beckman Coulter) following standard protocols (31 ). All samples in a buffer containing 20 mM Tris, pH 7.5, 200 mM NaCl, and 5 mM DTT were loaded into a cell assembly composed of a double sector charcoal-filled centerpiece with a 12-mm path length and either quartz or sapphire windows. The density and viscosity of the ultracentrifugation buffer at 20 °C were measured with a DMA 5000 M density meter and an AMVn viscometer (both Anton Paar), respectively. The cell assembly in the sedimentation velocity experiments contained identical sample and reference buffer volumes of 300 μl was placed in a rotor and temperature equilibrated at rest at 20 °C for 2 h before it was accelerated from 0 to 50,000 rpm. Rayleigh interference optical data were collected at 1-min intervals for 12 h. The velocity data were modeled with diffusion-deconvoluted sedimentation coefficient distributions c(s) in SEDFIT (32 ), using algebraic noise decomposition and with signal-average frictional ratio and meniscus position refined with nonlinear regression. The s-value was corrected for time, temperature, and radial position, and finite acceleration of the rotor was accounted for in the evaluation of Lamm equation solutions (33 (link)).
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7

Glycerine-Water Viscosity Reference

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Reference solutions were prepared by mixing liquid glycerine (Cat-nr. 131339.1211, PanRec AppliChem, ITW Reagents) with water for molecular biology (Cat-nr. H20MB0501, Millipore). The reference viscosities and mass densities were measured with an automated viscosity (Anton Paar, AMVn Viscometer, Switzerland) and density meter (Anton Paar, DMA 4500, Switzerland). For details see ESI, † ch. 1.
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