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6 protocols using anti cd3 pe dazzle 594

1

Immunophenotyping of PBMC Subsets

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PBMCs were assessed for CD4 and CD8 cell phenotypic characterization, activation marker expression, and frequency of different populations of NK and B cells. PBMCs were stained with anti-CD3 PE/Dazzle 594 (Biolegend), anti-CD62L PE, and anti-CD31 PE/Cy7 for phenotypic characterization; anti-CD3 PE/Dazzle 594 (Biolegend), anti-CD8 APC/Cy7, anti-HLA-DR Percp5.5, anti-CD38 FITC, anti-CD25 APC, and anti-CD127 PE/Cy7 for activation marker analysis; and anti-CD3 PE/Cy7, anti-CD56 APC/Cy7, anti-CD16 FITC, anti-CD19 APC, and CD27 PE for NK and B cell phenotyping (all from BD Biosciences) in the second tube for 30 min at room temperature in the dark. CD4 cells in the first two tubes were identified as CD8 À CD3 + cells. The cells were washed and fixed by adding 3% formaldehyde and were acquired within 24 h to obtain 50 000 gated lymphocyte events by FACSAria Fusion (BD Biosciences). The data were analyzed using FACSDiva software.
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2

Multiparametric Analysis of T-cell Subsets

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PBMCs were thawed, washed with PBS, and stained with the Zombie Yellow Fixable Viability Kit for 25 min at room temperature. Subsequently, the cells were washed with PBS and incubated for 25 min at 4°C with antibodies for membrane marker staining prediluted in flow cytometry buffer: anti-CD3 PE/Dazzle 594, anti-CD4 FITC, anti-CD45RA PE/Cy7, anti-CD27 Brilliant Violet 421, anti-inducible T-cell costimulator (ICOS) Brilliant Violet 421, anti-CD127 Brilliant Violet 510, anti-C-C chemokine receptor type 7 (CCR7) PE/Cy7, anti-HLA-DR PerCP, anti-CD62L PerCP/Cyanine 5.5 (all from Biolegend), and anti-CD25 PE (Miltenyi Biotec). Afterwards, the cells were washed with flow cytometry buffer and fixation/permeabilization reagent (Foxp3/transcription factor buffer set, eBioscience) was added to each sample followed by an incubation step of 25 min at 4°C. Then, the cells were washed with permeabilization buffer (Foxp3/transcription factor buffer set) and incubated with anti-Foxp3 APC (eBioscience), prediluted in permeabilization buffer, for 25 min at 4°C. Finally, cells were washed with permeabilization buffer and resuspended in flow cytometry buffer. Acquisition and compensation was performed as described for ICS.
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3

Comprehensive Immunophenotyping of MART-1 Specific T Cells

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Stimulated PBMCs were stained with MART-1 Tetramer (TCMetrix, Lausanne, Switzerland) PE, anti-CD3 PE/Dazzle 594, anti-CD8 AF700, anti-CD45RA FITC, anti-CD4 PerCP/Cy5.5, anti-CD25 BV605, anti-CD127 APC/Cy7, anti-CD39 APC, anti-CD73 PE/Cy7 (all antibodies from Biolegend, San Diego, CA, USA). Dead cells were excluded using Zombie Aqua (Biolegend, San Diego, CA, USA). Briefly, cells were resuspended and washed in PBS supplemented with 2% FBS (Gibco by Life Technologies, Grand Island, NY, USA), incubated for 45 min at room temperature in the presence of MART-1 tetramer, washed twice and incubated with the indicated antibodies for 20 min at 4 °C, cells were finally washed and analyzed by flow cytometry with a Fortessa instrument (BD Biosciences, San Jose, CA, USA).
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4

Immune Profiling of Aortic Arch

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Carotid arteries and aortic arch were dissected from mice and single
cell suspensions were prepared by digestion in 37°C for 1hr in
collagenase buffer. Single cells were first incubated with LIVE/DEAD Fixable
Aqua Dead Cell Stain Kit (Molecular Probes, Cat# L34957) for 30 minutes at room
temperature to stain for dead cells. After washing, the cell suspensions were
labelled with the following fluorescently conjugated antibodies for 1 hour at
4°C: anti-CD11c-APC-Cy7 (BD Pharmingen, Cat# 561241),
Anti-MHCII-eFluor450 (Invitrogen, Cat# 48-5321-82), anti-CD45- Alexa Fluor 700
(Invitrogen, Cat# 56-0451-82), anti-CD3- PE/Dazzle 594 (BioLegend, Cat# 100245),
anti-CD64-PE (BD Pharmingen, Cat# 558455), Anti-CD11b-PerCP/Cy5.5 (BioLegend,
Cat# 101227). Flow cytometry was performed with Gallios Flow Cytometer at the CU
Cancer Center Flow Cytometry Shared Resource core facility. Kaluza flow
cytometry analysis software was used for data analysis.
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5

Multiparameter Flow Cytometry Analysis

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Flow cytometry analyses were performed on an LSR Fortessa flow cytometer (BD Biosciences). Automatic compensation was performed using CompBeads (BD Biosciences). Fluorescence minus one controls were performed to define gates of positivity. Following antibodies and reagents were used: biotinylated anti-CD11b, anti-CD33 PE-Cy7, anti-HLA-DR PE-Cy7, anti-CD15 FITC, anti-CD8 PE, anti-CD4 APC-Hy, anti-CD127 FITC, anti-CD16 FITC, anti-CD45 RO PE, andi-CD45 RA FITC, anti-CD95 PD-CF594, anti-PD-1 APC, anti CD62L APC (BD Biosciences); anti-CD14 APC-Cy7, anti-CD3 BV 605, anti-CD3 PE/Dazzle 594, anti-CD4 PE-Cy7, anti-CD4 PerCPCy5.5, anti-CD56 PE-Cy7, andi-CD28 FITC, anti-CD27 APC, anti-ICOS APC-Cy7, anti-CD137 PE, anti-CD137 APC, Zombie Yellow Fixable Viability Kit (BioLegend); eFluor 450 labeled streptavidin, anti-CD8 APC-H7, anti-Foxp3 APC, anti-CCR7 APC, anti-TIM3 eFluor 450, anti-TIGIT PE, anti-LAG3 PerCPeFluor710 (eBioscience), anti-CD25 PE (Myltenyi Biotec) and anti-OX40 APC (R&D Systems).
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6

Quantifying CD38+ CD8+ Cell Frequency

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Frequency of CD38+ CD8+ cells in the study participants was determined in by flow cytometry using frozen PBMCs. PBMCs were revived and rested for 2 h before staining them with anti-CD3 PE/Dazzle 594 (Biolegend, USA), anti-CD8 APC/Cy7 and anti-CD38 FITC (both from BD Biosciences, USA) as described previously [20 (link)]. The cells were analysed on FACSAria Fusion using FACSDiva software (BD Biosciences, USA).
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