The largest database of trusted experimental protocols

8 protocols using type 1 agarose

1

Fluorescent Labeling of pHLIP Variants

Check if the same lab product or an alternative is used in the 5 most similar protocols
IRDye QC1 maleimide was purchased from LI-COR (Lincoln, NE, USA). Variant 3 (Var3) pHLIP with the amino acid sequence shown in Fig. 1b was purchased from CS Bio (Menlo Park, California, USA). Var3 ICG-pHLIP was provided by pHLIP Inc. (Kingston, RI, USA). Intralipid® 20%, I.V. fat emulsion, Direct Red 81 and agarose Type 1 were purchased from Sigma-Aldrich. All reagents were used without further purification.
+ Open protocol
+ Expand
2

R-Plasmid Screening via Alkaline Lysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The selected bacterial isolates were screened for R-plasmid by alkaline lysis method which described in Feliciello and Chinali, 1993 [14 (link)]. A 30 µl plasmid sample was electrophoresed through 0.7% Agarose (Type 1,
Sigma) with ethidium bromide (0.6µg/ml) in TE buffer at 120 V for 3 hours. The bands were visualized in a gel documentation system (Vilber Lourmat, France).
+ Open protocol
+ Expand
3

Antioxidant Capacity Evaluation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gallic acid, chlorogenic acid, ellagic acid, ascorbic acid, ferrous sulfate, tannic acid, phenantroline and caffeic acid were purchased from Merck (Darmstadt, Germany). 2,2-Diphenyl-1-picrylhydrazyl (DPPH), thiobarbituric acid (TBA), 1,1,3,3-tetraethoxypropane (MDA), bovine serum albumin (BSA), agarose type I, sodium azide, aluminium chloride, potassium acetate, quercetin, quercitrin, isoquercitrin, rutin, kaempferol, catechin, epicatechin and Folin–Ciocalteu’s phenolic reagent were acquired from Sigma Aldrich Co. (St. Louis, MO, USA). All other chemicals used were of analytical grade.
+ Open protocol
+ Expand
4

Validating eMSOT Accuracy in Tissue Oxygenation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For validating the accuracy of eMSOT in quantifying blood oxygenation in deep tissue, we prepared tissue mimicking phantoms, containing blood at known oxygenations levels. Specifically, for simulating tissue background, 2-cm-diameter cylindrical solid phantoms were created by using 1.5% Agarose Type I, Sigma-Aldrich (solidifying in <37°), 2% intralipid and 3–5% freshly extracted pig blood diluted in NaCl. Different blood oxygenation levels were achieved by diluting oxygen in whole blood (oxygenation process) or by mixing the blood with different amounts of sodium dithionite (Na2O4S2) (deoxygenation process)31 . The blood oxygenation levels were monitored using a Bloodgas Analyser (Eschweiler Gmbh & Co. KG, Kiel Germany).
+ Open protocol
+ Expand
5

Facile Synthesis of Gold Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
AuNPs were synthesized using agarose (Type I Agarose, Sigma-Aldrich) and gold(iii) chloride trihydrate (Sigma-Aldrich) at various concentrations of both reagents in water. A solution of agarose (4.5 mL water, 0.025 g to 0.150 g agarose, leading to 0.5 and 3.0 m/v% concentrations calculated for the 5 mL overall solution) was heated to 90 °C and vigorously stirred in a heating magnetic stirrer at 400 rpm. When the solution of agarose became transparent (after 15 min of heating), a solution of the gold salt (0.5 mL, with concentration ranging between 0.10 and 10.0 mM, leading to final concentrations between 0.01 and 1.0 mM) was added to the stirred hot solution. After keeping the mixture at 90 °C for 30 min with a continuous stirring, it was allowed to cool down to room temperature (RT) to result in a colored hydrogel.
+ Open protocol
+ Expand
6

Kaolin Characterization and Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Kaolin-S and kaolin-P were purchased from Takehara Chemical Industrial Co., Ltd. (Okayama, Japan) and Mineral and Pigment Solutions Inc. (NJ, USA), respectively. Kaolin-S is used for medical and pharmaceutical products and kaolin-P is used for industrial products. Both kaolins were suspended in saline (Otsuka Pharmaceutical Co. Ltd., Tokyo, Japan) containing 0.05% of Tween 80 (Nacalai Tesque, Kyoto, Japan) by sonication for 15–20 min, at a concentration of 2 mg/mL, as a stock solution. Crystal appearance observed under a scanning electron microscope (SEM) was done by A-KIT Corporation (Gifu, Japan). The size distributions of kaolins used in the present study was analyzed by dynamic light scattering (DLS) using FPAR-1000 (Otsuka Electronics Co., Ltd., Osaka) as described previously [2 (link)]. Physical characterization of particles such as zeta-potential was done by UBE Scientific Analysis Laboratory, Inc. (Yamaguchi, Japan). Type I agarose, low melting point agarose, dimethyl sulfoxide and Triton X-100 were bought from Sigma-Aldrich. Ethidium bromide was obtained from Merck (Darmstadt, Germany). Other chemicals were purchased from Wako Pure Chemical Industries (Osaka, Japan).
+ Open protocol
+ Expand
7

Antioxidant and Antimicrobial Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quercetin (≥95 %), tannic acid, 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS), (+) - 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid - Trolox (≥97 %), type I agarose and anhydrous potassium persulfate (K2S2O8), dimethyl sulfoxide (DMSO) were acquired from Sigma-Aldrich (Aldrich Brasil Ltda., Brazil). l-ascorbic acid (≥99.0 %), ethanol PA (99.5 %), and anhydrous sodium carbonate Na2CO3 (≥99.5) were obtained from Synth (LABSYNTH, Brazil), while ultrapure monohydrate gallic acid and aluminum chloride (III) (≥99.5 %) from Vetec (VETEC-Sigma-Aldrich, Brazil). The Folin-Ciocalteu reagent and bovine serum albumin–BSA were acquired from Merck (Merck, USA). Glacial acetic acid PA and sodium hydroxide were obtained from Dinâmica (Dinâmica, Brazil. Nutrient broth, malt extract, yeast extract, potato extract, and agar were purchased from Acumedia (Acumendia, USA). DMSOd6 and TMSP-d4 (2,2,3,3-d4-3- sodium trimethylsilylpropionate) were purchased from Cambridge Isotope Laboratories, Inc. (USA). The reagents used in antimicrobial susceptibility tests were ciclopirox olamine [(LOPROX®), 10 mg g−1, Sanofi-Aventis, Brazil)], DMSO [(≥99.0), Sigma-Aldrich (Aldrich Brasil Ltda., Brazil], DMEM Mix F12, penicillin G, gentamicin, amphotericin B, glucose, l-glutamine, and fetal from Gibco (Thermo Fisher Scientific, Brazil).
+ Open protocol
+ Expand
8

Agarose Hydrogel Fabrication Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Agarose gels were prepared by dissolving 1 g of type I agarose (Sigma-Aldrich) in 100 ml of bidistilled water. The solution was then autoclaved for 30 min. Agarose solution gelified quickly at RT; therefore, stock gels were first melted in a microwave oven at 500 W for 30 s. To produce cubic or cylindric hydrogels, hot agarose solutions were poured in polyethylene molds, which were then placed in a 4°C fridge for 2 hours. Molds containing hydrogels were rinsed in abundant water at RT, and the hydrogels were gently detached from the molds with a spatula. Hydrogel spheres were produced by dripping hot agarose solution from a 10-ml plastic syringe in an ice-cold water bath, thus obtaining 3-mm spheres.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!