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235 protocols using ethanol

1

Gadolinium Oxide Nanotubes Synthesis

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Gadolinium acetate hydrate and urea were dissolved in ethanol (FUJIFILM Wako Pure Chemical Corporation, Tokyo, Japan) by stirring at room temperature to form a clear solution (molar ratio of gadolinium acetate hydrate, urea, and ethanol = 1:2:206). Next, the solution was heated at 160 °C for 9 h in a polytetrafluoroethylene tube. The precipitates were washed with ultrapure water and freeze-dried to obtain Gd2O3 nanotubes.
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2

Preparation and Characterization of Polysorbate 80 and DTX Solutions

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Two types of solutions were prepared:12 test solutions (A‐L, Table S1) and four DTX solutions (Table S4). The 12 test solutions consisted of polysorbate 80 (NOF), 100% ethanol (Fuji Film Wako Pure Chemical), distilled water, and 0.5 mg/mL of indocyanine green (ICG, Daiichi‐Sankyo). Four DTX solutions were prepared using DTX (Sanofi K. K), polysorbate 80 (NOF), 100% ethanol (Fuji Film Wako), saline (Otsuka Pharmaceutical Factory), distilled water, and 0.5 mg/mL of ICG (Daiichi‐Sankyo). For the control group, polysorbate 80 was used instead of DTX. The final concentration of ICG for both solutions was 100 μg/mL. Osmotic pressure Π was calculated using the following equation: Π=CRT, where C denotes the molar concentration, R denotes the ideal gas constant, and T denotes the absolute temperature. The viscosity (μ) of each solution was measured by two tuning‐fork vibration viscometers (SV‐1H and SV‐1A, A & D) at room temperature (25.6–25.8°C).
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3

Genomic DNA Extraction from Plant Leaves

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Total genomic DNA from both parental individuals and the F1 progeny was extracted as follows: About 100 mg milled leaf tissue was mixed with 500 μl lysis buffer (0.3% sodium dodecyl sulfate, 20 mM Tris-HCl [pH 8.0 at 25°C], 5 mM EDTA, 400 mM NaCl) and 4 μl RNase A (100 mg/ml; Qiagen Inc., CA, USA), and incubated at 65°C for 10 min. The mixture was then centrifuged (14,000 rpm, 20°C) for 2 min. Buffer AP2 (130 μl; Qiagen Inc.) was added to the cleared lysate and the samples were mixed, incubated on ice for 5 min, and centrifuged for 2 min (14,000 rpm, 20°C). Then, 500 μl isopropanol (Wako Pure Chemical Industries, Ltd., Osaka, Japan) was added to the supernatant, and the samples were mixed by inversion, incubated for 5 min at room temperature, and centrifuged for 10 min. The DNA pellet was washed twice with 500 μl of 70% ethanol (Wako Pure Chemical Industries, Ltd.). After each wash, the sample was centrifuged for 5 min, and 500 μl of 99.5% ethanol (Wako Pure Chemical Industries, Ltd.) was added to the pellet. After incubation for 5 min at room temperature, the sample was centrifuged for 5 min and resuspended in 100 μl Tris-EDTA buffer.
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4

Immunofluorescence Analysis of Skin Barrier Proteins

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Calcitriol, ethanol, and 4′,6-diamidino-2-phenylindole dihydrochloride n-hydrate (DAPI) were obtained from Fujifilm Wako Pure Chemical Corporation (Osaka, Japan). Dfb ointment (Biostir-AD) was purchased from Biostir Inc. (Osaka, Japan).
Primary antibodies against filaggrin (1:1000 dilution), involucrin (1:1000 dilution), and loricrin (1:1000 dilution) were purchased from BioLegend (San Diego, CA, USA). Anti-claudin-1 antibody (1:20,000 dilution) was obtained from Spring Bioscience (Pleasanton, CA, USA), anti-occludin antibody (1:1000 dilution) was obtained from Cell Signaling Technology (Beverly, MA, USA), and anti-ZO-1 antibody (1:4000 dilution) was purchased from Proteintech (Rosemont, IL, USA). The secondary antibodies conjugated to Alexa Fluor dye were purchased from Thermo Fisher Scientific (Waltham, MA, USA) and diluted 1:1000.
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5

Optimizing Oxidative Stress Assays

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Quercetin, protoporphyrin IX (PpIX), dimethyl sulfoxide (DMSO) was purchased from Sigma-Aldrich, USA. Ethanol, superoxide dismutase (SOD), catalase, ethidium bromide, hypoxanthine, diethylenetriaminepentaacetic Acid (DTPA), trifluoroacetic acid, acetonitrile, iron(II) perchlorate, hydrogen peroxide, fluorescein, phosphoric acid, Dulbecco’s phosphate-buffered saline (D-PBS) were purchased from FUJIFILM Wako Pure Chemical Corporation., Japan. 3’-(p-aminophenyl) fluorescein (APF) was purchased from Sekisui Medical Co. Ltd., Japan. Dihydroethidium DHE was purchased from Invitrogen, CA. Compound libraries (Core library; for pilot screening) were provided by drug discovery initiative (DDI), the University of Tokyo (https://www.ddi.u-tokyo.ac.jp/en/). WST-8 was purchased from Dojin Laboratoies, Japan. Xanthine oxidase was purchased from Calbiochem (USA).
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6

Ethanol Control for Benign Disease

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Ethanol (99.5%) for molecular biology (Fujifilm Wako Pure Chemical Corporation, Tokyo, Japan) was used as a control in this study.
For the human samples, 10 mL of peripheral blood samples were obtained from five patients with benign disease before treatment. All of the patients underwent surgical treatment at Showa University Koto Toyosu Hospital and provided informed consent for the use of their samples in this study. The collected peripheral blood samples were deposited in Paxgene Blood ccfDNA Tubes (Preanalytix GmbH, Hombrechtikon, Switzerland). Serum samples were extracted after centrifugation of the blood samples for 15 min (1900 × g, 4°C). The extracted serum samples were placed in 1.5-mL polypropylene round-bottom microtubes (catalog number 131-715C, Fukae Kasei Co., Ltd., Kobe, Japan) and were preserved at -80°C in an ultra-low-temperature freezer (MDF-C8V1, Panasonic Corporation, Osaka, Japan).
The Institutional Review Board of Showa University approved the study. We explained the study protocol to the patients before they provided written informed consent. This study was registered with the University Hospital Medical Information Network in Japan, no. UMIN000017045.
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7

Synthesis of PDMA-γ-PDA Amphiphilic Copolymer

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Manganese(II)
chloride
tetrahydrate (MnCl2·4H2O, 99.99%) was purchased
from Sigma-Aldrich. N,N-Dimethylformamide
(DMF, 99.5%), sodium hydroxide (NaOH, 97.0%), ethanol (EtOH, 99.5%),
and chloroform (CH3Cl, 99.0%) were purchased from Wako.
All chemicals were used without further purifications. The amphiphilic
copolymer, PDMA-γ-PDA, was synthesized from N-(3,4-dihydroxyphenthyl)methacrylamide and N-dodecylacrylamide
by free radical polymerization.18 (link),26 (link)−29 (link)
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8

Nonenolide Synthesis and Characterization

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NOB was synthesized by an established method50 (link) and provided by the Ushio Chemix Corp. (Shizuoka, Japan). Geranic acid (85%), choline bicarbonate (~80% in water), dimethyl sulfoxide-d6 (99.5 atom %D), chloroform-d (99.8 atom % D), and phosphate buffered saline tablets were purchased from Merck KGaA (Darmstadt, Germany). Acetone, 4% paraformaldehyde phosphate buffer solution, formic acid, and ethanol were purchased from Wako Pure Chemical Industries (Osaka, Japan). Diethylene glycol ethyl methyl ether was purchased from Tokyo Chemical Industries (Tokyo, Japan). Porcine skin (Yucatan Micropig) was purchased from Charles River Laboratories International (Yokohama, Japan). All other chemicals were of the highest grade commercially available, and all solutions were prepared in deionized and distilled water.
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9

Analytical Techniques for Compound Characterization

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Ethanol (Wako), acetonitrile (Wako), mEthanol (Wako), sulfuric acid (Wako), acetone (Wako), trifluoroacetate (Tokyo Chemical Industry), dimethyl sulfoxide (Wako), MTT (3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide), LPS and Griess reagent were all purchased from Sigma (St. Louis, MO, USA). An ELx 800 Universal Microplate Reader (BIO-TEK), VD-250R Freeze Dryer (TAITEC), US-105 Sonicator (SND), 5420 Centrifuge (IMOTO), R-300 Rotavapor (BUCHI), V-300 Vacuum Pump (BUCHI), High Performance Flash Chromatography (HPFC) system (Biotage AB), Medium Pressure Liquid Chromatography (MPLC) system (EPCLC, Yamazen), Preparative High Performance Liquid Chromatography (PHPLC) system (EPCLC, Yamazen), 1220 Infinity LC (Agilent Technologies), NMR spectrometer (Bruker DRX-600; Bruker Daltonics, Billerica MA, USA), Quadrupole time-of-flight (qTOF) mass spectrometer (Agilent Technologies, USA) and JASCO DIP-370 polarimeter (JASCO, Tokyo, Japan) were used.
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10

Fabrication of Zinc-Based Composite Materials

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Zinc metal plate (99.5% purity) was purchased from Nilaco Corp. Chloroform (99.0% purity), deionized water and ethanol (99.5%) were purchased from Wako Pure Chemical Industries (Osaka, Japan). Phosphate-buffered saline solution (PBS) was purchased from Sigma-Aldrich (St. Louis, MI, USA), while polyvinyl alcohol, PVA was from Kanto Chemical Co. (Tokyo, Japan), and PLLA (Mw: 80–100 kDa) was supplied by Polysciences, Warrington, PA, USA. Zinc chloride salt was also purchased from Wako Pure Chemical Industries.
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