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19 protocols using spectrofluorometer

1

Quantification of Lipid Peroxidation Levels

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Plasma and urinary LPO levels were measured as thiobarbituric acid-reactive substances20 (link). Briefly, plasma or urine aliquots were mixed with 8% SDS and a mixture of 0.8% 2-thiobarbituric acid and 20% acetic acid. These mixtures were incubated at 95 °C for 60 min. After cooling, the samples were centrifuged at 1600 × g for 5 min to precipitate interfering particulate materials. The LPO level was measured using a spectrofluorometer (Thermo Fisher Scientific, Waltham, MA, USA). The LPO concentration in the kidney was measured using an LPO assay kit (Cayman Chemical, Ann Arbor, MI, USA) according to the manufacturer’s instructions.
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2

Apoptosis and Caspase-3/7 Activity Assay

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The Annexin V‐FITC/PI Apoptosis Detection Kit (Solarbio, Beijing, China) was used to detect apoptotic cells. Cells were collected 24 hours after treatment, washed with PBS (Solarbio, Beijing, China) and resuspended in binding buffer (500 μL) in an Eppendorf (EP) tube. Annexin V‐FITC and PI (5 μL) were added into binding buffer. After mixing, the EP tube was kept away from light for 5‐15 minutes at room temperature. Flow cytometry (BD, San Diego, CA, USA) was used to identify cells of normal status, early apoptosis, late apoptosis and death; FITC was detected using channel FL1, and PI was detected using channel FL3.
Caspase‐3/7 activity was measured using the Apo‐ONE® Homogeneous Caspase‐3/7 Assay kit (Promega, Madison, WI, USA). Cells were seeded in 96‐well plates and cultured with baicalein (0, 40, 80 μmol/L) for 24 hours. Apo‐ONE® Caspase‐3/7 reagent was added (100 μL) and mixed with medium, and the plate covered with a plate sealer and incubated for 3 hours. The fluorescence (RFU) of each well was measured using a spectrofluorometer (Thermo Scientific) at an excitation wavelength of 499 nm and an emission wavelength of 521 nm. Caspase‐3/7 activity = RFU(treatment group)/RFU(control group) × 100%.
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3

Electrochemical Detection of 17β-Estradiol Aptasensor

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Cyclic voltammetry (CV) and different pulse voltammetry (DPV) were performed using a Dropsense potentiostat (Methrohm, Singapore). The 17β-Estradiol (E2) aptasensor was fabricated on the screen-printed electrode (SPE) (Scrint Technology (M) Sdn. Bhd) and was used as working electrode. A rod-shaped glassy carbon electrode and Ag/AgCl electrodes (containing 3.0 M KCl) were used as auxiliary and reference electrodes with scan rate of 0.05 mV/s, respectively. The potential used ranged from −1.0 V to 1.0 V was applied in all measurements. All homogeneous mixture of material solutions were prepared using sonicator bath Elma S30H. The morphology and chemical characterizations of nanowires and microspheres were measured using Scanning Electron Microscope (SEM) (ZEISS, Jena, Germany) and Fourier Transform Infrared (FTIR) (Perkin Elmer, Massachusetts, United State). The fluorescence spectra were measured using spectrofluorometer (Thermo Fisher Scientific Inc., Wilmington, NC, USA).
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4

Caspase-12 Activity Quantification

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Following treatment of cells, cytosolic extracts (20 μg per treatment) were added to the caspase assay buffer [36 (link)] plus the caspase-12 substrate ATAD-7-AFC (Invitrogen). The amount of liberated AFC was tested by a spectrofluorometer (Thermo-Fisher, Shanghai, China).
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5

Caspase Activity Assay Protocol

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Cytosolic proteins from 1 × 106 cells per treatment were extracted (4 (link), 5 (link)). Twenty micrograms of cytosolic extracts was added to the described caspase assay buffer (4 (link), 5 (link)) along with the caspase-3 substrate Ac-DEVD-AFC or the caspase-9 substrate Ac-LEHD-AFC. The released AFC was measured using a spectrofluorometer at 450 nm (Thermo-Labsystems, Helsinki, Finland).
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6

Tau Protein Aggregation Assay

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5 μl of 50 μm TauRD proteins in assembly buffer (see above) were diluted 10-fold to 50 μl with ammonium acetate (NH4Ac), pH 7, containing 20 μm ThS (final ratio of protein to ThS = 1:4). The ThS fluorescence was measured in a Tecan spectrofluorometer with an excitation wavelength of 440 nm and an emission wavelength of 521 nm (slit width, 2.5 nm each) in a black 384-well microtiter plate with round wells (Thermo Labsystems). Measurements were carried out at 25 °C, and the background fluorescence was subtracted from respective blanks.
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7

CCK-8 Assay for Cell Viability

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CCK-8 assay was performed using CCK-8 Cytotoxicity Assay Kit (Solarbio) to detect cell viability. WT and NOG1+/- cells (104 cells) were seeded in 96-well plates with 100 μL medium for each well. After 48 h incubation, each well was incubated with 10 μL of CCK-8 solution for 2 h away from light before measuring the absorbance at 450 nm using a spectrofluorometer (Thermo Scientific).
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8

Evaluating BBB Integrity via Evans Blue Assay

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BBB integrity was assessed by measuring the leakage of Evans Blue (EB; Sigma-Aldrich Corp., St. Louis, MO, USA) as previously reported [41 (link)], with some modifications. Briefly, a 2% EB solution in physiological saline (4 mL·kg−1 body weight) was injected at 4 or 24 h following reperfusion. The route of EB injection is tail vein injection. After the dye circulated for 1 h, the brain tissues were homogenized in 50% trichloroacetic acid (TCA) solution. The supernatant was diluted with a 3x volume of 100% ethanol and analyzed in a spectrofluorometer (Thermo Fisher Scientific, Waltham, MA, USA) at an excitation wavelength of 620 nm and an emission wavelength of 680 nm. The EB concentration was normalized to tissue weight (ng·g−1).
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9

Measuring Intracellular Calcium in HMC-1 Cells

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HMC-1 cells (1 × 105) were pretreated with Fura-2/AM (4 µM) in IMDM supplemented with 10% heat-inactivated FBS for 30 min. After the cells were washed with a calcium free medium containing EGTA (0.5 mM), the cells were treated with physcion or BAPTA-AM (10 µM) and stimulated with PMACI. The kinetics of intracellular calcium was measured for 100 s with a spectrofluorometer (excitation 360 nm, emission 450 nm, Thermo Fisher Scientific Inc., Shanghai, China).
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10

Caspase-3/7 Activity Measurement

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Caspase-3/7 activity was measured using the Apo-ONE Homogeneous Caspase-3/7 Assay Kit (Promega, Madison, WI, USA). The fluorescence (relative fluorescence units) of each well was measured using a spectrofluorometer (Thermo Fisher Scientific).
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