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4 protocols using acetyl histone h3 antibody sampler kit

1

Histone Acetylation and Vitellogenin Analysis

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Fourth-instar nymphs were treated with dsGfp, dsNlHdac1 or dsNlHdac4, and raised to adults. For immunoblot analysis of H3 and H4 acetylation, ovaries were dissected from females (n = 50) at 0–6 h after eclosion, and total histones were extracted using the EpiQuik total histone extraction kit (Epigentek). For immunoblot analysis of vitellogenin, the fat body was dissected from females (n = 50) at 3 days after eclosion. Equal amounts of protein were loaded for each lane on SDS-PAGE gel. Western blotting was performed with antibodies of acetyl-histone H3 antibody sampler kit (Cell Signaling Technology), histone H3 acetylation antibody panel pack II (Epigentek), acetylhistone H4 antibody sampler kit (Cell Signaling Technology) and anti-vitellogenin mAb. Immuno-reactivity was imaged with the Molecular Imager ChemiDoc XRS+ system (Bio-Rad).
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2

Quantification of Histone Acetylation

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Proteins were extracted from one million cells after 2.5 h of treatment with DMSO or HDACi using RIPA buffer supplemented with 1 M NaF, 10 mM phenylmethylsulfonyl fluoride, and a protease inhibitor cocktail. For detection of specific acetylation of histone H3 and H4, the following antibodies were used: Acetyl-Histone H3 Antibody Sampler kit #9927 (Cell Signaling), anti-H3K23 (D6Y7M, Cell signaling), -H4K5 (EP1000Y, Abcam), -H4K8 (EP1002Y, Abcam), -H4K12 (Abcam), -H4K16 (EPR1004, Abcam), and -Histone H4 (Abcam).
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3

Phosphorylated Tau and Histone Acetylation Antibodies

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Monoclonal antibody against phosphorylated tau PHF1 (S396/404), 12E8(S262/356) and against total tau (K9JA) was a kind gift from Prof. Dr. Eckhard Mandelkow and Prof. Dr. Eva-Maria Mandelkow (DZNE, University of Bonn, Germany). Acetyl-Histone H3 antibody sampler kit comprising acetylation of K9, K14, K18, K27, and K56, anti-H4K5ac, and anti-H2BK12ac antibody were from Cell Signaling Technology Danvers, MA, USA (9927, 8647 and 5410). Anti-HDAC1, -HDAC2, -HDAC3, and -HDAC6 antibodies were from Cell Signaling Technology (antibody Sampler Kit #9928). Anti-SGPL1 antibody was from abcam (Cambridge, UK; ab56183) and Anti-glial fibrillary acidic protein (GFAP) antibody from Cell Signaling Technology (12389).Secondary antibodies were HRP linked anti-rabbit and anti-mouse IgG (Cell Signaling Technology, 7074 and 7076). 5,5′-Dimethyl-BAPTA-AM was from Sigma- Aldrich, Munich, Germany (16609).
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4

Multiplex Antibody Detection Methodology

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The following antibodies were used: an anti-FLAG antibody (Sigma-Aldrich, F3165, 1:1000); anti-PCNA (PC10) antibody (Santa Cruz Biotechnology, sc-56, 1:2000); Acetyl-Histone H3 Antibody Sampler Kit (Cell Signaling Technology, #9927, 1:2000); Acetyl-Histone H4 Antibody Set (Merck-Millipore, #17-211, 1:2000); anti-histone H3 antibody (Merck-Millipore, #07-690, 1:5000); anti-BRD2 antibody (Bethyl, A302-583A, 1:1000); anti-BRD3 antibody (Bethyl, A302-368A, 1:1000); anti-BRD4 antibody (Bethyl, A301-985A, 1:1000); Pan-BRD4 antibody (Sigma-Aldrich, AV39076, 1:1000); anti-V5 antibody (Sigma-Aldrich, V8137, 1;2000); anti-UAF1 antibody (Santa Cruz Biotechnology, sc-514473, 1:500); anti-S tag antibody (Sigma-Aldrich, SAB2702227, 1:5000); anti-phospho-histone H3 (Ser10) antibody (Cell Signaling Technology, #9706, 1:1000); anti-beta-tubulin antibody (Abcam, ab15568, 1:2000); anti-lamin B1 antibody (Abcam, ab16048, 1:1000); anti-phospho-histone H2A.X (Ser139) (Merck-Millipore, #05-636, 1:2000) . The anti-phospho-S653 ATAD5 antibody (1:1000) and anti-human ATAD5 antibody (1:1000) were raised in rabbits.
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