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8 protocols using icos c398.4a

1

Innate and Adaptive Immune Phenotyping

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Monoclonal antibodies used for staining of PBMCs for innate cell phenotyping were CD3 (UCHT1, #557943), CD19 (HIB19, #557921), CD14 (M5E2, #565283), HLA-DR (G46-6, #560651), CD11c (O33-782, #561355), and CD123 (7G3,554529) from BD Biosciences (Franklin Lakes, NJ), CD56 (MEM188,17-0569) and CD16 (CB16,47-0168) from eBiosciences (San Diego, CA); for cTFH phenotyping CD3 (SP34-2, #562877), CD4 (L200, #560836), CXCR5 (RF8B2), and CXCR3 (IC6/CXCR3) BD Biosciences, ICOS (C398.4 A) and PD-1 (EH12.2H7) from Biolegend (San Diego, CA) (Supplementary Fig. 2). Data were collected on an LSRII (BD Biosciences) and data were analyzed using R 3.6.3 software. Sample sizes available for statistical analysis differed based on sample availability (monocytes—MNP: n = 7; IM = 10, cTFH—MNP: n = 8; IM: n = 9).
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2

Multiparameter FACS and Cell Sorting

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The following antibodies were used in fluorescence-activated cell sorting (FACS) and cell sorting: CD45.1 (A20, BioLegend), CD45.2 (104, BioLegend), CD4 (H129.19, BD Pharmingen), CD25 (7D4, BD Pharmingen), IL-17A (TC11-18H10.1, BD Pharmingen), IFN-g (XMG1.2, BD Pharmingen), CD44 (IM7, Bio-Legend), CD62L (MEL-14, BioLegend), CD25 (7D4, BD Pharmingen), Lag3 (46-2231-80, eBioscience), Nrp1 (FAB566A, R&D Systems), Ki67 (SolA15, eBioscience), CTLA4 (14D3, eBioscience), GITR (DTA-1, eBioscience), ICOS (C398.4A, BioLegend), Foxp3 (FJK-16 s, eBioscience), p27 (sc-776, Santa Cruz Biotechnology), p-p27 (ab85047, Abcam), Foxo1 (ab39670, Abcam), p-Foxo1 (9461S, Cell Signaling Technology), Raptor (ab5454, Abcam), Brdu (B44, BD Pharmingen).
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3

Multiparametric Flow Cytometry Analysis of Mediastinal Lymph Nodes

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Mediastinal lymph nodes (mLNs) were harvested, and single-cell suspensions were prepared. The cells were preincubated with Fc blocker and then incubated on ice for 30 min with antibody cocktail and Fixable Viability Dye, Ghost Red 780 (Tonbo Biosciences). Flow cytometry was conducted using fluorochrome-conjugated Abs for CD3 (145-2C-11, BD Biosciences), CD4 (RM5, BD Biosciences), CXCR5 (2G8, BD Biosciences), ICOS (C398.4A, BioLegend), PD-1 (J43, BD Biosciences and 29F.1A12, BioLegend), B220 (RA3–6B2, BD Biosciences), Fas (Jo2, BD Biosciences), PNA (FL-1071, Vector Laboratories), CD11b (M1/70, BD Biosciences), Ly6G (1A8, BioLegend), and rat IgG2a isotype control (BioLegend). Data were acquired using Fortessa (BD Biosciences Immunocytometry Systems, Franklin Lakes, NJ). All data were analyzed with the FlowJo software (TreeStar, Ashland, OR).
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4

Immunophenotyping of EAMG Rat Immune Cells

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On day 50 (peak of the disease) after induction of EAMG, rats were euthanized under deepening anesthesia. Spleens and inguinal lymph nodes were removed and the weights were measured. Then the spleens and inguinal lymph nodes were minced through a 70 μm cell strainer to prepare single-cell suspensions of mononuclear cells (MNCs) under aseptic conditions. Red blood cells in spleen MNCs were lysed with a lysis buffer (Biolegend) for 5 min. All specimens were coded to facilitate blind testing. The spleen or inguinal lymph nodes MNCs suspension with a final volume of 100 μl were labeled with corresponding monoclonal antibodies and incubated for 30 min at 4 °C in the dark. The following antibodies were used in the assay: CD3 (1F4; Biolegend), CD4 (OX35; eBioscience), B220 (HIS24; eBioscience), CD20 (SP32; Abcam), CD161 (10/78; BD Pharmingen), MHC II (HIS19; Biolegend), CD80 (3H5; Biolegend), CD86 (24F; Biolegend), CD40 (HM40-3; Biolegend), CD27 (LG.7F9; eBioscience), ICOS (C398.4A; Biolegend), CXCR5 (ERP8837; Abcam). Unconjugated primary antibodies were detected with Alexa Fluro 488-conjugated anti-rabbit IgG (Abcam). Samples were analyzed using an Aria II flow cytometer (BD).
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5

Multiparameter FACS and Cell Sorting

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The following antibodies were used in fluorescence-activated cell sorting (FACS) and cell sorting: CD45.1 (A20, BioLegend), CD45.2 (104, BioLegend), CD4 (H129.19, BD Pharmingen), CD25 (7D4, BD Pharmingen), IL-17A (TC11-18H10.1, BD Pharmingen), IFN-g (XMG1.2, BD Pharmingen), CD44 (IM7, Bio-Legend), CD62L (MEL-14, BioLegend), CD25 (7D4, BD Pharmingen), Lag3 (46-2231-80, eBioscience), Nrp1 (FAB566A, R&D Systems), Ki67 (SolA15, eBioscience), CTLA4 (14D3, eBioscience), GITR (DTA-1, eBioscience), ICOS (C398.4A, BioLegend), Foxp3 (FJK-16 s, eBioscience), p27 (sc-776, Santa Cruz Biotechnology), p-p27 (ab85047, Abcam), Foxo1 (ab39670, Abcam), p-Foxo1 (9461S, Cell Signaling Technology), Raptor (ab5454, Abcam), Brdu (B44, BD Pharmingen).
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6

Comprehensive Immune Profiling of PBMCs

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PBMCs were stained with Fixable Viability Dye (Invitrogen) in PBS, followed by staining with fluorochrome-conjugated antibodies against CD4 (RPA-T4), CD45RA (HI100), CXCR5 (J252D4), CXCR3 (G025H7), CCR6 (11A9), PD-1 (EH12.2H7), and ICOS (C398.4A) (from BioLegend and BD Biosciences). Cells were stained in MACS buffer (0.5 % FBS, 1 % penicillin and streptomycin, and 2 mM EDTA in PBS) for 30 min at 4°C.
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7

Multiparametric Flow Cytometry Analysis

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Unless otherwise stated all chemicals were purchased from Sigma Aldrich. The following antibodies were used in flow cytometry (FACS) and cell sorting: CD4 (H129.19, BD Pharmingen), CD8 (53-6.7, Biolegend), CD25 (7D4, BD pharmingen), IL-4 (11B11, Biolegend), IL-17A (TC11–18H10.1, BD Pharmingen), IFN-γ (XMG1.2, BD Pharmingen), CD44 (IM7, Biolegend), CD62L (MEL-14, Biolegend), CTLA4 (14D3, eBioscience), GITR (DTA-1, eBioscience), TIGIT (GIGD7, eBioscience), ICOS (C398.4A, Biolegend), Foxp3 (FJK-16s, eBioscience), IL-10 (JES5–16E3, Biolegend), Nrp1 (FAB566A, R&D), IL-4R (I015F8, Biolegend), Ki67 (SolA15, eBioscience).
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8

Multiparameter Flow Cytometry of Macaque Immune Cells

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The following fluorochrome conjugated monoclonal antibodies reactive with macaque cells were used for flow cytometry studies: CD3 (SP34-2, BD Biosciences [BD]), CD4 (L200, BD), CD8 (SK1, BD), CD95 (DX2, BD), CD28 (CD28.2, BioLegend), CCR5 (3A9, BD), CXCR5 (MU5UBEE, Invitrogen), PD-1 (EH12.2H7, BioLegend), ICOS (C398.4A, BioLegend), CCR7 (150503, BD), α4β7 (A4B7, NHP Reagent Resource), LAG3 (3DS223H, eBioscience), Tim-3 (F38-2E2, BioLegend), TIGIT (MBSA43, Invitrogen), CD20 (2H7, BioLegend), CD19 (J3-119, Beckman Coulter), HLA-DR (L243, BioLegend), CD10 (HI10A, BioLegend), CD21 (B-ly4, BD), CD27 (O323, BioLegend), IgD (IADB6, Southern Biotech), IgG (G18-145, BD), IL-21R (2G1-K12, BioLegend), Ki-67 (B56, BD), BCL6 (IG191E/A8, BioLegend), CD80 (2D10, BioLegend), CD56 (B159, BD), CD45 (D058-1283, BD), CD14 (MoP9, BD), CD16 (3G8, BD), CCR2 (48607, R&D Systems), CD11b (ICRF44, BioLegend), CD11c (3.9, Invitrogen), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), CD80 (2D10, BioLegend), CD86 (FUN-1, BD), CD141 (1A4, BD), CD163 (GHI/61, BioLegend), and CD123 (7G3, BD).
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