The largest database of trusted experimental protocols

39 protocols using jetprime buffer

1

HMGCR siRNA Knockdown Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were plated in 6-well plates for 24 h, then cells were transfected with transfection reagent INTERFERin (#409-10, Polyplus, France), Jet PRIME Buffer (#712-60, Polyplus, France) and HMGCR (ELAVL1, KHSRP, DHX36, HNRNPD and ZFP36) siRNA or siRNA-negative control (Jet PRIME Buffer: 200 μL; JetPRIME: 2 μL; 20 μmol/L siRNA: 2.5 μL for per well) for 24 h. The siRNA sequences used in the study are listed in Supporting Information Table S1.
+ Open protocol
+ Expand
2

Transfection and Analysis of NBC Transporters

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human HEK293T (H.T), lung fibroblast MRC5, lung adenocarcinoma A549 cells were purchased from ATCC (Washington, DC, USA). Cells were cultured in Dulbecco’s Modified Eagle Medium containing 10% fetal bovine serum (FBS) and 100 U/mL penicillin-streptomycin antibiotics at 37 °C in 5% CO2/95% air. Human NBCe1-B (an electrogenic form of sodium bicarbonate cotransporter, encoded by SLC4A4) and NBCn1 (electroneutral form of sodium bicarbonate cotransporter, encoded by SLC4A7) clones were provided by Shmuel Muallem (National Institutes of Health, Bethesda, MD, USA). Plasmid DNAs (1 μg/μL) were mixed with 200 μL Jet Prime Buffer (B200225, Polyplus-transfection, Illkirch-Graffenstaden, France). Transfection reagent (4 mL) (21Y0910L1, Polyplus-transfection) was incubated with mixed Jet Prime Buffer and DNA for 10 min in the dark. Incubated DNAs were transferred into H.T-cultured plates, and all procedures were performed in accordance with the protocol of the manufacturer (Polyplus-transfection). MRC5 cells were used for determination of cell viability, and A549 cells were used for determination of native NBC activity. S0859 (18497, Cayman, Ann Arbor, MI, USA) was used for the specific inhibition of NBC activity.
+ Open protocol
+ Expand
3

STAT1 Knockdown in NCI-H1299 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
NCI-H1299 cells were plated at 50% confluency in 6-well plates for 24 h, then cells were transfected with transfection reagent JetPRIME (Polyplus, #114-15), Jet PRIME Buffer (Polyplus, #712-60) and STAT1 (CaMKII) siRNA or siRNA-negative control (Jet PRIME Buffer (Polyplus, #712-60); 200 µL, JetPRIME 2 μL, 20 μM siRNA: 2.5 μL for per well) for 24 h. The siRNA sequences used in the study are provided in Supplementary Table S1.
+ Open protocol
+ Expand
4

Transfecting H292 cells with c-Myc siRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
H292 cells (1.5 × 105) were seeded in 6-well plates for 24 h. Then, cells were transfected with transfection reagent JetPRIME (Polyplus-transfection, #114–15, Illkirch, France), Jet PRIME Buffer (Polyplus-transfection, #712–60), and c-Myc siRNA or siRNA-negative control (Jet PRIME Buffer (Polyplus-transfection, #712–60) 200 μL, JetPRIME 2 μL, 20 μM siRNA 2.5 μL for per well) for 24 h (Ding et al., 2019 (link)). The siRNA sequences used in the study are provided in Supplementary Table S1.
+ Open protocol
+ Expand
5

Noxa siRNA Transfection in DLD-1 and HCT116 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
DLD-1 and HCT116wt cells were seeded in 6-well plates (6×105 cells with 2 ml medium per well) and cultured at 37°C for 24 h. A mixture containing 110 pmol Noxa siRNA (cat. no. sc-37305; Santa Cruz Biotechnology, Inc.) or control siRNA (cat. no. sc-36869; Santa Cruz Biotechnology, Inc.), 200 µl jetPRIME® buffer (Polyplus-transfection SA) and 4 µl jetPRIME® siRNA transfection reagent (Polyplus-transfection SA) was vortexed for 10 sec, spun down and incubated for 10 min at room temperature. The mixture was subsequently added to each well of the 6-well plate and incubated at 37°C for 24 h. Cells were then harvested for further experiments.
+ Open protocol
+ Expand
6

Differentiation and Maintenance of Human Monocytic and Adherent Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human pro-monocytic cell lines U937 and U1.1 (NIH reagents program) were maintained in RPMI 1640 (Cell Clone, CC3014) with 10% FCS (Gibco Life Technologies, 10270) at 37°C in 5% CO2, humidified incubator. Adherent cells HEK293T (Clonetech) and TZM-bl (NIH reagents program) cells were maintained in DMEM (Cell Clone, CC3004) and 10% FCS, as described above. Monocytic cells were differentiated into macroPHAges by treating them with phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich Co, P8139) at 10 ng/ml for 24 h. Adherent cells were seeded in tissue culture-treated Petri-plates or six-well plates in complete DMEM media overnight and transfection and titration experiments were carried out as explained below. Reagents like HEPES (N-2-hydroxyethylpiperazine-N9-2-ethane sulfonic acid; Sigma- Aldrich Co, H3784) sodium bicarbonate (Sigma- Aldrich Co, S5761), glutamine (Sigma- Aldrich Co, G3126) etc. were used for media preparations. Transfection reagents Jet Prime and Jet Prime buffer, (Polyplus™, 114-07), Retro-concentrin (Clonetech Laboratories Inc., RV100A-1), MCSF (R&D systems, 216-MC-025) and used at a concentration at 50 ng/ml for activating MDM’s. IL2 (eBiosciences, 14-8029-63) was used at a concentration of 20 units/ml. PHA (Sigma Aldrich Co, L8902-5mg) was used at 1 µg/ml.
+ Open protocol
+ Expand
7

Retroviral and Lentiviral Particle Generation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pBabe, pBabe-myc-BirA*-LMP1, and pBabe-LMP1-BirA*-HA
retrovirus particles were generated by Jetprime transfection of HEK293T cells in
10 mm dishes with pBabe vectors and packaging plasmids pMD2.G (Addgene, 12259)
and pSPAX2 (Addgene, 12260). Five μg of each construct DNA were used per
plate with 30 μL of Jetprime and 500 μL of JetPrime buffer
(Polyplus) was mixed and incubated at room temperature for 25 minutes. The
DNA-Liposome complexes were then added dropwise to each place. Media was
collected and replaced with fresh DMEM at 48, 72, and 96 hours
post-transfection, centrifuged at 1,000 × g for 10 minutes, filtered
through a 0.45 μM filter into sterile tubes, and frozen at
−80°C until use. To make shRNA lentiviral stocks, HEK293-T cells
were transfected with expression plasmids (pLenti X1 Syntenin-1 shRNA, pLenti X1
ALIX shRNA, or pLenti X1 scramble shRNA) and the packaging plasmids pMD2.G
(Addgene; #12259), pMDLgpRRE (Addgene; #12251), and pRSVRev
(Addgene; #12253) to produce retroviral particles for transduction.
Media was collected and stored as described for pBabe viruses. All packaging
plasmids were gifts from Didier Trono.
+ Open protocol
+ Expand
8

Lentiviral Transduction of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lentiviral particles were packaged using HEK293FT cells seeded at a density of 250,000 cells per well in 6-well culture plates. In brief, 1 μg of pLKO.1-Puro TRC plasmid containing either non-targeting control shRNA (5’-CAACAAGATGAAGAGCACCAA-3’) or ATF4-targeted shRNA (5’-GCCTAGGTCTCTTAGATGATT-3’) was combined with 1 μg of packaging plasmids psPAX2 and pMD2.G, mixed at a molar ratio of 2:1. The plasmid mix was diluted in jetPRIME buffer (Polyplus Transfection, 89129-924) and transfection reagent, following the manufacturer’s protocol. pMD2.G and psPAX2 were gifts from Didier Trono (Addgene plasmid # 12259, #12260). Lentiviral supernatants were collected at 24 and 48 h post-transfection, supplemented with 8 μg/ml Polybrene, filtered through 0.45-μm nitrocellulose filters, and stored at −80 °C. Cells were transduced with lentivirus and were selected for viral infection via addition of 2 μg/mL of puromycin for 72 hours.
+ Open protocol
+ Expand
9

MCF-7 Cells Overexpressing GABARAPL1

Check if the same lab product or an alternative is used in the 5 most similar protocols
MCF-7 control cells (C) and MCF-7 Flag:GABARAPL1:6His (GABARAPL1) cells were obtained previously in our laboratory following transfection with pcDNA3.1 control, pcDNA3.1-Flag-GABARAPL1-(His)6 [47 (link)]. MCF-7-Flag:GABARAPL1-G116A:6his (GABARAPL1 G116A c1 and c2) cells were obtained in the same way following transfection with pcDNA3.1-Flag-GABARAPL1-G116A-(His)6 vectors. The cells were cultured in Dulbecco's minimum essential medium (DMEM) (PAA, E15-891) supplemented with 100 μg/ml penicillin/streptomycin (PAA, P11-010) and 10% fetal bovine serum (FBS) (PAA, A15-101) in a 5 % CO2 incubator at 37°C. To inhibit autophagosome/lysosome fusion, cells were incubated for 2 h in complete medium supplemented with 100 nM bafilomycin A1, 40 μM chloroquine or 50 mM NH4Cl. To induce autophagy, cells were incubated in EBSS for 4h at 37°C. To inhibit proteasome degradation, cells were cultured in complete medium supplemented with 2 μM MG132 for 16 h.
For transient transfection, 2 μg of pGFP, pGABARAPL1-GFP, pGABARAPL1-G116A-GFP, 200 μl Jetprime Buffer and 4 μl Jetprime reagent (Polyplus transfection, 114-07) were used per reaction according to the manufacturer's protocol.
+ Open protocol
+ Expand
10

Transient Silencing of ANXA1 in ECC-1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For transient ANXA1 silencing, transfection was performed in 6-well plates using the jetPRIME reagent (PolyPlus Transfection) with, alternatively, ON-TARGETplus Human ANXA1 (301) siRNA (J-011161-07-0010; Dharmacon) or control siRNAs (SIC001; Sigma-Aldrich) on shC1GALT1 and SCRAMBLE ECC-1 cells, according to established protocols [41 (link), 42 (link)]. Briefly, 2.5 × 105 cells were transfected with 22 pmol siRNA using 2 µl of JetPRIME Transfection reagent and 100 µl of JetPRIME buffer (PolyPlus Transfection). Then, 48 h after transfection, cells were analyzed by PCR, qPCR and WB. Alternatively, 24 h after transfection cells were used for indicated cell-based assays as above.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!