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Prism 8 program

Manufactured by GraphPad
Sourced in United States

GraphPad Prism 8 is a scientific data analysis and graphing software. It is designed for researchers, scientists, and clinicians to analyze, visualize, and present their data. Prism 8 offers a wide range of statistical tests, curve fitting, and data organization tools to help users interpret their experimental results.

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5 protocols using prism 8 program

1

Molecular Weight Determination of CheA and CheW-Rlike Complex

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Multi-angle light scattering (MALS) coupled with reverse-phase chromatography experiments were used to determine the molecular weights of CheA, CheW-Rlike, and their complex at 25 °C. Each sample was prepared at a final protein concentration of 10 mg/mL. All samples were buffer exchanged into the column running buffer (50 mM MOPS pH 7.5, 150 mM KCl, and 5 mM MgCl2) to prevent contributions of buffer components from complicating the molecular weight calculations. The CheW-Rlike protein was incubated for 15 min with 5 mM DTT to cleave any interdimer disulfide bonds prior to buffer exchanging. The mixed sample was prepared in a 1:1 molar ratio of CheA: CheW-Rlike. In all, 40 μL of each sample was injected onto a GE S200 Increase (10/300) column pre-equilibrated at room temperature. A BSA standard at 5 mg/ml was used as a calibration control. GraphPad Software’s Prism8 program was used for data analysis and molecular weight calculations.
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2

Statistical Analysis of Experimental Data

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The results obtained from the experiments were expressed as mean value ± SEM. The significance of the difference between groups was determined using the one-way ANOVA test. Then Fisher's post-hoc LSD (least significant differences) test was made. All statistical operations were performed in the "SPSS for Windows, 22.0" statistical software and p < 0.05 was considered significant. GraphPad Prism-8 Program was used for graphics.
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3

Quantifying New Bone Formation

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Statistical analysis was performed on the computer using the GraphPad Prism 8 Program (GraphPad© Software 2018, San Diego, CA, USA).
To analyze the influence of time on the percentage of new bone formation within each experimental group, an “unpaired t-test” was used and, for comparative analysis of the percentage of new bone formed by comparing the groups within the same experimental period, an ANOVA for independent samples and the “post hoc” Tukey’s test were used.
For all analyses, p values < 0.05 were considered statistically significant (n = 5 for each period and group). Bartlett’s test was used as a test of data normality.
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4

Statistical Analysis of Experimental Data

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Differences between the two groups were evaluated with an unpaired two-tailed Student’s t-test. One-way analysis of variance (ANOVA) followed by Tukey post hoc test was used for comparison of more than two independent groups. Weight analysis and echocardiography data are presented as box-and-whisker plots with boxes showing the mean and interquartile range (IQR) and whiskers indicating the minimum and maximum values. All qRT-PCR gene expression data are shown as mean ± standard error of the mean (SEM) in bar plots. Plots and statistics were performed by using GraphPad Prism® 8 program (GraphPad Software, San Diego, CA, USA; version 8.03) and Adobe Illustrator CS6 (Adobe Inc. Mountain View, CA, USA), version 16.0.0.
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5

Profiling of miRNA in Breast Cancer EVs

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EVs from MCF7 and MCF7BoM2 were collected and miRNA was extracted using miRNeasy Micro Kit (Qiagen, Hilden, North Rhine-Westphalia, Germany). Expression profiling of miRNA was performed by using the Affymetrix GeneChip miRNA Array. For calculation of FDR and fold change in differential expression analyses, the ComparativeMarkerSelection module from GenePattern89 (link) (Broad Institute, Cambridge, MA, USA) was used. For clustering and visualization, the HierarchicalClustering and HierarchicalClusteringViewer modules from GenePattern were used. For metastasis-free survivals, Kaplan–Meier curves were plotted using the time to event as the outcome. Statistical differences in survival across groups were assessed using the log-rank test. For other analyses, student’s t-tests (two-sided) were used unless otherwise noted. All other statistical analyses were performed using the GraphPad Prism 8 Program (GraphPad Software, San Diego, CA, USA). Asterisk: *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.001, nsp ≥ 0.05. Representative experiments were repeated independently three times with similar results.
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