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Scope 3

Manufactured by ADInstruments
Sourced in Colombia, United States

Scope 3.5.6 is a laboratory equipment product from ADInstruments. It functions as a digital oscilloscope, providing visualization and analysis of electrical signals.

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12 protocols using scope 3

1

Shock Tube Protocol for Traumatic Brain Injury

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Our shock tube constituted stainless-steel tubing (inner diameter: 25 mm, outer diameter: 34 mm), divided by a polyester diaphragm into high-and-low pressure parts (length of the low-pressure and high-pressure parts: 800 mm and 400 mm, respectively) (Fig. 1. a, b). Compressed nitrogen gas was driven into the high-pressure portion; the shock wave was propagated to the low-pressure portion by rupturing the diaphragm. Each mouse was placed outside the shock tube at 55 mm between the end of the low-pressure portion and the mouse’s ear canal. The shock wave was irradiated to the front of each mouse’s head from diagonally upward to prevent a blast wind (Fig. 1). The shock wave’s pressure profiles were measured using a microphone preamplifier (#426B03 PCB piezotronics). The output was recorded and converted using an oscilloscope (Power lab system 2/26 #ML826, AD instruments Inc, Depew, NY) with a 100-k/s sample rate. Data analysis was performed with the Scope 3 software (version 3.9.2, AD instruments Inc, Castle Hill, Australia). The peak pressure of the shock wave was set to 25 kPa, as it did not cause brain hemorrhage in the same shock tube model18 (link).
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2

Ussing Chamber Measurements of Transepithelial Properties

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Cells were grown on Snapwell inserts and mounted into a Ussing chamber in which each chamber was connected to a calomel voltage sensing electrode and an AgCl2 current sensing electrode by 3 m KCl salt bridges containing 3% (w/v) agar. Cells were bathed in 7.5 ml Krebs solution and continually gassed with either 5% (v/v) CO2/95% (v/v) O2 for control conditions or 10% (v/v) CO2/90% (v/v) O2 to induce hypercapnia. To measure the short circuit current (Isc), cells were clamped at 0 mV using a DVC‐1000 Voltage/Current Clamp (WPI) and a Powerlab 1200 feedback amplifier (AD Instruments, Oxford, UK) injected the appropriate current to clamp transepithelial voltage (Vte) to 0 mV, which was recorded as the Isc using Scope 3 software (AD Instruments). To monitor transepithelial resistance (Rte), a 2 s, 10 mV pulse was applied every 30 s.
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3

Scotopic and Photopic ERG Analysis

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The ERG was recorded using a LS–W (Mayo) and analyzed using Scope 3 software (ADInstruments) for scotopic condition and LabChart 8 software (ADInstruments) for photopic condition. The scotopic ERG was recorded in 7-week-old mice, and the photopic ERG was recorded in 4-week-old mice. Scotopic ERG was recorded after 12 h of dark adaptation. The flash intensities ranged from 1.5 to 4500 cdms/m2. Data from three trials were averaged for single-flash responses. Photopic ERGs were recorded after light adaptation. The flash intensities ranged from 1778 to 22,330 cdms/m2 with a background illumination of 35 cd/m2. Data from 32 trials were averaged for single-flash responses.
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4

Electrophysiological Assessment of Diaphragm Function

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At 35 days after injury and transplantation, animals were anesthetized using isoflurane. Compound muscle action potential (CMAP) recordings from the left and right hemidiaphragm were separately obtained, as previously described (Lepore et al., 2010 (link)). Briefly, a single stimulation (0.5 ms; 6 mV) of the phrenic nerve was performed by needle electrodes placed transcutaneously near the passage of the nerve in the neck. A ground electrode was placed in the tail, and reference electrode was inserted in the abdominal region. A surface strip electrode was placed along the costal margin of the hemi-diaphragm. CMAP recordings were obtained using an ADI Powerlab 8/30 stimulator and BioAMP amplifier (ADInstruments, Colorado Springs, CO), followed by computer-assisted data analysis (Scope 3.5.6, ADInstruments). For each animal, 10–20 tracings were averaged. Following CMAP recording, a right upper quadrant laparotomy was performed to expose the inferior surface of the hemi-diaphragm. Bipolar electrodes spaced 3 mm apart were introduced to obtain electromyography (EMG) recordings from the three diaphragmatic subregions (for at least 2 min each) during normal eupnic breathing (Li, Javed, Scura, et al., 2015b (link)). The EMG signal was amplified, filtered through a band-pass filter (50–3,000 Hz) and integrated using LabChart 7 software (ADInstruments).
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5

Phrenic Nerve Conduction Assessment in Rats

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Rats were anesthetized in the same manner described above. Phrenic nerve conduction studies were performed with single stimulation (0.5 ms duration; 6 mV amplitude) at the neck via near nerve needle electrodes placed along the phrenic nerve (Li et al., 2014b (link); Nicaise et al., 2012 (link)). The ground needle electrode was placed in the tail, and the reference electrode was placed subcutaneously in the right abdominal region. Recording was obtained via a surface strip along the costal margin of the diaphragm, and CMAP amplitude was measured baseline to peak. Recordings were made using an ADI Powerlab 8/30 stimulator and BioAMP amplifier (ADInstruments, Colorado Springs, CO), followed by computer-assisted data analysis (Scope 3.5.6, ADInstruments). For each animal, 10–20 tracings were averaged to ensure reproducibility.
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6

Phrenic Nerve Stimulation Post-SCI

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Isoflurane (2.0-2.5% diluted in oxygen; Piramal Healthcare, Bethlehem, PA) was used to anesthetize the rats. Positive and negative stimulating needle electrodes were inserted at the neck close to the phrenic nerve either ipsilateral or contralateral to the injury and spaced 0.5cm apart (Lepore et al., 2008 (link); Lepore et al., 2010 (link)). A ground needle electrode was subcutaneously placed into the tail, and a reference electrode was inserted subcutaneously into the right abdominal region. A recording electrode with a surface strip was placed along the costal margin of the diaphragm The phrenic nerve was then stimulated (0.5 ms duration; 6 mV amplitude), and 10-20 recordings were obtained with 5 sec intervals between stimulations. CMAP amplitude was measured baseline to peak. An ADI Powerlab 8/30 stimulator and BioAMP amplifier (ADInstruments, Colorado Springs, CO) were used for recordings, and Scope 3.5.6 (ADInstruments) was used to analyze data. CMAPs were measured for each animal weekly for three weeks following SCI.
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7

Phrenic Nerve Stimulation in Mice

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After mice were anesthetized with isofluorane, stimulating needle electrodes were placed in the neck along the phrenic nerve, as described by Li et. al. (K. Li et al., 2015 (link)). A ground needle electrode was placed in the tail, a reference needle electrode was placed subcutaneously in the contralateral abdomen, and a recording surface strip was placed on the costal margin of the hemi-diaphragm, ipsilateral to stimulation. Stimulation pulses of 0.5 ms and up to 6 mV amplitude were injected via the stimulating electrode and the resulting CMAP was recorded using an ADI Powerlab 8/30 stimulator and BioAMP amplifier (ADInstruments, Colorado Springs, CO), followed by computer-assisted data analysis (Scope 3.5.6, ADInstruments). The baseline to peak CMAP amplitude was measured and averaged over at least 10 pulses. Non-ALS mice with EAAT2WT/WT, EAAT2WT/CR or EAAT2CR/CR were assessed at P90 (N = 16, 8, 14 respectively), P120 (N = 20, 12, 19) and P150 (N = 8, 8, 8) to identify potential confounders. Mice without SOD1-G93A and SOD1-G93A mice with EAAT2WT/WT, EAAT2WT/CR or EAAT2CR/CR were assessed at P90 (N = 42, 14, 15, 14, respectively), P120 (N = 51, 18, 29, 28) and P150 (N = 34, 10, 14, 17).
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8

Sciatic Nerve Stimulation and CMAP Recording

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Mice were anesthetized with 1% isoflurane and 0.5% oxygen. Following dermatotomy, stainless steel-stimulating needle electrodes were inserted at the sciatic notch, near the sciatic nerve. A ground electrode was placed subcutaneously in the back and a reference electrode placed subcutaneously at the ankle. The sciatic nerve was stimulated (0.2 msec duration; 1.6 mV amplitude) and the response recorded via a needle electrode inserted into the plantar muscle in the medial half of the foot, following the line connecting the first and fifth tarsal/metatarsal joints. Data were collected using ADI Powerlab 8/30 stimulator and BioAMP amplifier (ADInstruments, Colorado Springs, CO) and analyzed using Scope 3.5.6 (ADInstruments). The compound muscle action potential (CMAP) (M-wave) amplitude was measured from baseline to peak. Data were averaged between left and right hindlimb traces.
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9

Phrenic Nerve Conduction Assessments in Mice

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At 117 days of age, mice were anesthetized with isoflurane (Piramal Healthcare, Bethlehem, Pennsylvania) at a concentration of 1.0–1.5% in oxygen. Animals were placed supine, and the abdomen was shaved and cleaned with 70% ethanol. Phrenic nerve conduction studies were performed with stimulation of the phrenic nerve via needle electrodes trans-cutaneously inserted into the neck region in proximity to the passage of the phrenic nerve (Cheng et al., 2021 (link); Ghosh et al., 2018 (link)). A reference electrode was placed on the shaved surface of the right costal region. Phrenic nerve was stimulated with a single burst at 6 mV (amplitude) for a 0.5 ms duration. Each animal was stimulated between 10 and 20 times to ensure reproducibility, and recordings were averaged for analysis. ADI Powerlab8/30stimulator and BioAMPamplifier (ADInstruments, Colorado Springs, CO) were used for both stimulation and recording, and Scope 3.5.6 software (ADInstruments, Colorado Springs, CO; RRID: SCR_001620) was used for subsequent data analysis. Following recordings, animals were immediately euthanized, and tissue was collected (as described below).
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10

Phrenic Nerve Conduction Evaluation After Spinal Injury

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Four weeks post-surgery, rats were anesthetized with isoflurane (Piramal Healthcare, Bethlehem, PA, United States) at a concentration of 3.0–3.5% diluted in oxygen. Animals were placed supine and the region just below the rib cage was shaved and cleaned with 70% ethanol. Phrenic nerve conduction studies were performed with stimulation at the neck via near nerve needle electrodes placed along the phrenic nerve. A reference electrode was placed on the shaved surface of the right costal region. The phrenic nerve was stimulated with a single burst at 6 mV (amplitude) for a 0.5 ms duration. Each animal was stimulated between 10 and 20 times to ensure reproducibility, and recordings were averaged for analysis. Animals were daily followed for any signs of distress in response to this procedure. ADI Powerlab 8/30 stimulator and BioAMPamplifier (ADInstruments, Colorado Springs, CO, United States) were used for both stimulation and recording, and Scope 3.5.6 software (ADInstruments, Colorado Springs, CO, United States) was used for subsequent data analysis. An additional control animal without lesion (laminectomy only) was used as an example of a normal CMAP recording.
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