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21 protocols using sodium acetate

1

Lipid Nanoparticle Formulation Protocol

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Cholesterol (Nippon Fine Chemical Co., Ltd, Japan), Dlin-MC3-DMA (AVT Pharmaceutical Tech Co. Ltd., China), DSPC (Nippon Fine Chemical Co., Ltd), DMG-PEG2000 (AVT Pharmaceutical Tech Co. Ltd., China), Ethyl alcohol (Tedia, USA), sodium acetate (FUJIFILM Wako Pure Chemical Corporation, Japan), acetic acid (Sigma Aldrich, Germany), water for injection (WFI), HEPES (FUJIFILM Wako Pure Chemical Corporation, Japan), sodium acetate (FUJIFILM Wako Pure Chemical Corporation, Japan), sodium hydroxide (Merck Germany), disodium hydrogen phosphate (FUJIFILM Wako Pure Chemical Corporation, Japan), potassium dihydrogen phosphate (FUJIFILM Wako Pure Chemical Corporation, Japan), sodium chloride (Merck, Germany), potassium chloride (FUJIFILM Wako Pure Chemical Corporation, Japan) were used in relevant experiments. Water for injection (WFI) was used for water.
Seven Excellence pH/ion meter (Mettler Toledo, Switzerland), Excellence Plus High-Performance Microbalance (Mettler Toledo, Switzerland) and Precision balance (Mettler Toledo, Switzerland), General T-mixture (In-house developed), SB—4200DTS sonication system (Ningbo science Biotechnology Co., Ltd., China) were used. The AKTA flux S and AKTA flux 6 TFF system (GE Healthcare, Sweden) and 0.1 m2 NMWCO 100 kDa PES cassette (Sartorius Stedim, Germany) were used in buffer exchange step for 100 × scale-up batch.
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2

Tissue-Nonspecific Alkaline Phosphatase Staining

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Sodium acetate (0.1 M; Fujifilm Wako Pure Chemical Corp.) and 0.1 M acetate (Fujifilm Wako Pure Chemical Corp.) were mixed to prepare TRAP buffer. Naphthol AS-Mix phosphate (Sigma-Aldrich Co., LLC., MO, USA) diluted with N,N-Dimethylformamide (Fujifilm Wako Pure Chemical Corp.) and fast red violet LB salt (Sigma-Aldrich Co., LLC.) were diluted with TRAP buffer to prepare TRAP staining solution. Cells were fixed by 10% formaldehyde (Fujifilm Wako Pure Chemical Corp.) for 30 min. Fixed cells were stained by adding TRAP staining solution for 20 min.
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3

Dietary Fiber and SCFA Effects on Immunity

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Mice were fed either normal chow containing 5% cellulose (Clea diet AIN-93G) or a low-fiber diet (Clea diet AIN-93G without cellulose). When studying the effect of a high-fiber diet, mice were given a low-fiber diet supplemented with 30% pectin (Wako, Tokyo, Japan). All diets were purchased from CLEA Laboratory Animal Corp. Mice were adapted to low-fiber or high-fiber chow 2 weeks before immunization and throughout the study.
When studying the effect of SCFAs, mice were given sodium acetate or sodium propionate or sodium butyrate (Wako) in the drinking water at a final concentration of 200 mM for 3 weeks before immunization and throughout the study. Mice were given normal drinking water in the control group.
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4

Fabrication of Microfluidic Devices

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Hen egg-white lysozyme (>95% purity) was
purchased from Hampton Research (Aliso Viejo, CA, USA). We used lysozyme
without further purification. Sodium chloride, sodium acetate, acetic
acid, glycerol, acetone, and 2-propanol were purchased from Wako Pure
Chemical Industries, Ltd. (Osaka, Japan). Trichloro(1H,1H,2H,2H-perfuluorooctyl)silane
was purchased from Sigma-Aldrich (St. Louis, MO, USA). Polydimethylsiloxane
(PDMS; SILPOT 184 W/C) was purchased form Dow Corning Toray Co., Ltd.
(Tokyo, Japan). We purchased a SU-83010, a SU-83050, and a SU-8 developer
from Nippon Kayaku Co., Ltd. (Tokyo, Japan). Silicon wafers were obtained
from Global Top Chemical (Tokyo, Japan).
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5

Therapeutic mAb Immunoglobulin (IgG) Characterization

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We purchased the therapeutic mAb immunoglobulin (IgG) gamma 1 drugs adalimumab and rituximab from Eisai Co., Ltd. (Tokyo, Japan) and Chugai Pharmaceutical Co., Ltd. (Tokyo, Japan), respectively. In addition, we purchased Tris-HCl buffer (pH 8.0), 10% trifluoroacetic acid, 0.1% formic acid, acetonitrile 0.1% formic acid and 7 K Dialysis Casettes from Thermo Fisher Scientific (San Jose, CA, USA). We obtained 8 M guanidine hydrochloride from Sigma-Aldrich (St. Louis, MO), dithiothreitol, iodoacetamide, sodium acetate, 2-morpholinoethanesulfonic acid, 4-(2-hydroxyethyl)-1-piperazinepropanesulfonic acid and deuterium oxide from FUJIFILM Wako Pure Chemical Co., Ltd. (Tokyo, Japan), and MicroSpin G-25 columns from GE Healthcare (Chicago, IL). We purchased trypsin from Promega Co. (Madison, WI); angiotensin II from Peptide Institute, Inc. (Osaka, Japan); and 18O-water, acetonitrile (LC-MS grade), and ordinary water (LC-MS grade) from Merck (Darmstadt, HE).
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6

Synthesis and Characterization of Ni-Ru Complexes

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Hydrochloric acid (Wako), acetic acid (Wako), sodium acetate (Wako), citric acid monohydrate (Wako), disodium hydrogenphosphate (Wako), sodium dihydrogenphosphate dihydrate (Wako), sodium hydroxide (Wako), sodium nitrite (Wako), chloroform (Wako), and 1,1′-dibenzyl-4,4′-bipyridinium dichloride hydrate (TCI) were purchased and used as received. Compounds [Ni2+(L)Ru2+(H2O){η6-C6(CH3)6}](NO3)2 ([I](NO3)2, L = N,N′-dimethyl-3,7-diazanonane-1,9-dithiolato), [Ni2+(H2O)(L)Ru2+(H){η6-C6(CH3)6}](NO3) ([Ihydride](NO3)), and K6[P2W186+O62] (K6[IIox]) were synthesized according to the reported procedures.6,15 (link) The buffer solutions were prepared using Hydrochloric acid (pH 2.06), citric acid/sodium citrate (pH 3.30), acetic acid/sodium acetate (pH 4.13, 5.07, 5.52), or phosphorus acid/sodium phosphate (pH 6.48, 7.38).
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7

Detecting Free Radicals in Water Exposed to CAP

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The inert gases helium (He), neon (Ne), argon (Ar), krypton (Kr), and xenon (Xe) were bought from Hokusan Co., Ltd. (Toyama, Japan). All gases were of pure grade (≥ 99.9%). The spin traps 5,5-dimethyl-1-pyrroline N-oxide (DMPO; Labotec Co., Ltd., Tokyo, Japan), 3,3,5,5-tetramethyl-1-pyrroline-N-oxide (M4PO; Sigma Aldrich Chem. Co., MO), phenyl N-t-butylnitrone (PBN; Sigma Aldrich Chem.), 3,5-dibromo-4-nitrosobenzene sulfonate (DBNBS; Wako Pure Chemical Industries, Ltd., Osaka, Japan), and 2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (cPTIO; Dojindo, Kumamoto, Japan) were used to detect the presence of different free radical species in ultrapure water following exposure to CAP by EPR spin trapping.
Thymine, thymidine, uracil, uridine, sodium acetate, and L-alanine were obtained from Wako Pure Chemical Industries, Ltd. Hydroxyphenyl fluorescein (HPF), aminophenyl fluorescein (APF), and diaminofluorescein-2 (DAF-2DA) were from Sekisui Medical Co., Ltd. (Tokyo, Japan). Hydroethidine (HE) and 2',7'-dichlorofluorescein diacetate (DCFH-DA) were from Molecular Probes Inc. (Eugene, OR).
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8

Reagents for Protein Crystallization

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Thaumatin from Thaumatococus daniellii, trypsin from bovine pancreatic, sodium chloride, sodium acetate, potassium sodium tartrate, acetic acid, acetone, and 2-propanol were purchased from Fujifilm Wako Pure Chemical Corporation (Osaka, Japan). Lysozyme chloride from egg white was purchased from Nacalai Tesque (Kyoto, Japan). Selenourea and trichloro(1H,1H,2H,2H-perfluorooctyl)silane were purchased from Sigma-Aldrich (St. Louis, MO, USA). N-(2-Acetamido)iminodiacetic acid (ADA) and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) were obtained from Dojindo laboratories (Kumamoto, Japan). p-Toluenesulfonic acid monohydrate and all ligands for trypsin were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Polydimethylsiloxane (PDMS; SILPOT 184 W/C) was purchased from Dow Corning Toray Co., Ltd. (Tokyo, Japan), while SU-8 3050 and the SU-8 developer were purchased from Nippon Kayaku Co., Ltd (Tokyo, Japan). Silicon wafers were obtained from Global Top Chemical (Tokyo, Japan) and cyclic olefin polymer (COP) films, 40 μm in thickness, were purchased from Zeon (Tokyo, Japan).
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9

Synthesis and Characterization of PAA Polymer

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PAA (M.W. = 1600) was purchased from Nittobo Medical Co., Ltd. (Fukushima, Japan). Methyl glycolate and sodium hydroxide were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Ampicillin, arabinose, acetate, sodium acetate, glycine, and dimethylformamide were purchased from FUJIFILM Wako Pure Chemical Co., Ltd. (Osaka, Japan). HEPES was purchased from Dojin Chemical Research Institute (Kumamoto, Japan).
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10

Serum Isoflavone Quantification by HPLC

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Serum daidzein and equol concentrations were measured by the methods reported by Gamache and Acworth [19] (link). An aliquot of the pretreated sample solution was used for high-performance liquid chromatography (HPLC) (Shimadzu LC10AD) with an electrochemical detector (Coulochem III, ESA Laboratories Inc., Chelmsford, MA) that was equipped with analytical cells (detector 1, 300 mV; detector 2, 600 mV) (ESA) and a guard cell (650 mV) (ESA). The HPLC conditions were as follows: column, Nova-Pac C18 (Waters, 3.9 mm × 150 mm; Nihon Waters K.K., Tokyo, Japan); column temperature, 40 °C; mobile phase, 50/35/15% (v/v/v) 50 mM sodium acetate (pH 4.8):methanol:acetonitrile (Wako, Osaka, Japan); and flow rate, 0.65 ml/min.
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