The largest database of trusted experimental protocols

6 protocols using anti tdp 43 polyclonal

1

Yeast Protein Expression and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast were grown and induced in galactose-containing medium for 5 h (TDP-43, FUS and EWSR1) or 8 h (α-syn). Cultures were normalized to A600nm=0.6, 6 ml of cells was then harvested and treated in 0.1 M NaOH for 5 min at room temperature, and cell pellets were resuspended into 100 μl 1×SDS sample buffer and boiled. Cleared lysates were separated using SDS-PAGE (4–20% gradient, Bio-Rad) and were then transferred to a PVDF membrane. Membranes were blocked using LI-COR blocking buffer for 1 h at room temperature. Primary antibody incubations were performed at 4°C overnight. Antibodies used were: anti-GFP monoclonal (Roche Applied Science), anti-TDP-43 polyclonal (Proteintech), anti-FUS polyclonal (Bethyl Laboratories), anti-EWSR1 monoclonal (Santa-Cruz Biotechnology), anti-Hsp104 polyclonal (Enzo Life Sciences) and anti-3-phosphoglycerate kinase (PGK) monoclonal (Invitrogen). Blots were processed using LI-COR Odyssey Fc Imaging system.
+ Open protocol
+ Expand
2

Monitoring Protein Aggregation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transformed Hsp104 variants and controls were grown overnight in raffinose media. The overnight cultures were diluted to an OD600 of 0.3 (A600nm = 0.3) and grown in galactose-supplemented media at 30°C. α-synuclein samples were induced for 8h, while FUS and TDP-43 samples were induced for 5h. Samples were then normalized to an OD600 of 0.6 (A600nm = 0.6). The pelleted cells were resuspended in 0.1 M NaOHfor5 min and then pelleted again and resuspended in 1xSDS sample buffer. The samples were then boiled and separated by SDS-PAGE (4%–20% gradient, Bio-Rad) and transferred to a PVDF membrane. The following primary antibodies were used: anti-GFP polyclonal (Sigma-Aldrich), anti-FUS polyclonal (Bethyl Laboratories), anti-TDP-43 polyclonal (Proteintech), anti-Hsp104 polyclonal (Enzo Life Sciences), and anti-PGK monoclonal (Invitrogen). Two fluorescently labeled secondary antibodies were used: anti-rabbit (Li-Cor) and anti-mouse (Li-Cor). Blots were imaged using a LI-COR Odyssey FC Imaging system.
+ Open protocol
+ Expand
3

Yeast Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeasts were grown and induced in galactose containing medium for 5 h. Cultures were normalized to A600 nm = 0.6; 6 mL of cells were harvested and treated in 0.1 M NaOH for 5 min at RT. Cell pellets were resuspended into 100 μL 1 × SDS sample buffer and boiled. Cleared lysates were separated by SDS-PAGE (4–20% gradient, BioRad) and transferred to a PVDF membrane. Membranes were blocked using LI-COR blocking buffer for 1 h at RT. Primary antibody incubations were performed at 4 °C overnight. Antibodies used: anti-TDP-43 polyclonal (Proteintech), anti-Hsp104 polyclonal (Enzo Life Sciences), and anti-PGK monoclonal (Invitrogen). Blots were processed using the LI-COR Odyssey Fc Imaging system.
+ Open protocol
+ Expand
4

Monitoring Protein Aggregation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transformed Hsp104 variants and controls were grown overnight in raffinose media. The overnight cultures were diluted to an OD600 of 0.3 (A600nm = 0.3) and grown in galactose-supplemented media at 30°C. α-synuclein samples were induced for 8h, while FUS and TDP-43 samples were induced for 5h. Samples were then normalized to an OD600 of 0.6 (A600nm = 0.6). The pelleted cells were resuspended in 0.1 M NaOHfor5 min and then pelleted again and resuspended in 1xSDS sample buffer. The samples were then boiled and separated by SDS-PAGE (4%–20% gradient, Bio-Rad) and transferred to a PVDF membrane. The following primary antibodies were used: anti-GFP polyclonal (Sigma-Aldrich), anti-FUS polyclonal (Bethyl Laboratories), anti-TDP-43 polyclonal (Proteintech), anti-Hsp104 polyclonal (Enzo Life Sciences), and anti-PGK monoclonal (Invitrogen). Two fluorescently labeled secondary antibodies were used: anti-rabbit (Li-Cor) and anti-mouse (Li-Cor). Blots were imaged using a LI-COR Odyssey FC Imaging system.
+ Open protocol
+ Expand
5

Yeast Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast were grown and induced in galactose containing medium for 5h from overnight cultures supplemented with raffinose. For plasmids under the control of the HSE promoter, cells were grown as for the thermotolerance assay and harvested after the incubation at 37ºC. Cultures were normalized to A600nm = 0.6, 3ml cells were harvested, treated in 0.1M NaOH for 5 min at room temperature, and cell pellets were then resuspended into 1x SDS sample buffer and boiled for 4min. Lysates were cleared by centrifugation at 14,000 rpm for 2min and then separated by SDS-PAGE (4–20% gradient, BioRad), and transferred to a PVDF membrane. Membranes were blocked in Odyssey Blocking Buffer (LI-COR). Primary antibody incubations were performed at 4ºC overnight. Antibodies used: anti-GFP monoclonal (Roche Applied Science), anti-TDP-43 polyclonal (Proteintech), anti-FUS polyclonal (Bethyl Laboratories), anti-Hsp104 polyclonal (Enzo Life Sciences), and anti-PGK monoclonal (Invitrogen). Membranes were imaged using a LI-COR Odyssey FC Imaging system.
+ Open protocol
+ Expand
6

Quantification of TDP-43, p65, and Tau Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
TDP-43, p65 and tau were quantified using Western immunoblot. Proteins (15 μg/sample) were heated at 95°C for 5 minutes in SDS sample buffer. For immunoprecipitation study, anti-TDP-43 polyclonal (ProteinTech, Chicago) or anti-p65 polyclonal antibody (Santa Cruz Biotechnology, Santa Cruz) was bound to protein G-coated magnetic beads (Dyanl, Invitrogen, Camarillo) and was incubated with 50 μg of lysate overnight at 4°C. After washing, immunoprecipitates were eluted with SDS sample buffer. Samples were resolved by 10% SDS-PAGE and transferred to a PVDF membrane (Polyscreen, PerkinElmer, Boston, MA). The membrane was incubated with anti-p65 (Invitrogen, Camarillo) or anti-TDP-43 2E2-D3 antibody (Abnova, Walnut), and western blot image was obtained using a chemiluminescence detection kit (Pierce Biotechnology, Rockford, IL). Each protein was estimated by standardization with actin.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!