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10 protocols using ar antibody

1

Androstanedione Regulates Androgen Receptor

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VCaP cells were plated on cover slips at a cell density of 400,000 cells per cover slip. Cells were serum starved for 24 hours using 1% C.S.S. phenol red-free DMEM media. Cells were treated with (100 nM) 5α-Androstanedione or 0.1% ethanol for 24 hours in 1% C.S.S. phenol red-free DMEM media. Cell coverslips were washed with 1X PBS, fixed with 4% formaldehyde, permeabilized with 0.5% Triton X-100, blocked with 2% horse serum, and incubated overnight at 4 °C with either 1.) AR antibody (rabbit) or 2.) AR antibody (mouse), 1:1000 in PBS (Santa Cruz Biotechnology, Dallas, TX). Cover slips were washed with PBS and incubated at room temperature in a dark box for 1 hour with either 1.) Texas Red antibody (rabbit) (Vector Labs, Burlingame, CA) or 2.) Alexa Fluor 633 antibody (mouse), 1:200 in PBS (Molecular Probes, Carlsbad, CA). Cover slips were mounted onto slides using Vectashield mounting medium with DAPI (Vector Labs, H-1200). Slides were subjected to confocal imaging at the Wayne State University School of Medicine Microscopy, Imaging, and Cytometry Resources Core Facility using the Ziess LSM 780 confocal microscope at a magnification of 40X.
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2

Comprehensive Cellular and Biochemical Assays

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All reagents used were of analytical grade and were purchased from the respective vendors as indicated. Alpha tubulin antibody, LPS, TPP tissue culture flasks, 10 cm petridishes, and 6-well plates (Sigma, St. Louis, MO, USA), AR antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA), ATP assay kit, NADP/NADPH assay kit (Abcam, Cambridge, MA, USA), Calcein Green, AM (Molecular Probes, Life Technologies, ThermoFisher Scientific, Waltham, MA, USA), Enhanced chemiluminescence (ECL plus) reagents were from Pierce (Rockford, IL, USA), Fetal bovine serum (Atlanta Biologicals, Flowery Branch, GA, USA), Gentamicin solution, Hepes, Horseradish peroxidase-conjugated anti-mouse and anti-rabbit IgG F(ab′)2 (Cell Signaling, Beverly, MA, USA), Phagocytosis assay kit (Cayman Chemical, Ann Arbor, MI, USA), Protein assay kit (Biorad, Hercules, CA, USA), RPMI-1640 medium (1×) with 2.05 mM L-glutamine and 2.0 g/L glucose (Hyclone Laboratories, GE Healthcare Life Sciences, South Logan, UT, USA), Phosphate-buffered saline were from (Gibco, Life Technologies, Waltham, MA, USA).
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3

Immunofluorescence Analysis of Androgen Receptor

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The AR antibody (Catalog: SC-816-G) was from Santa Cruz Biotechnology (Paso Robles, US). Testosterone and DHT were obtained from Sigma (Poole, UK). The SMA antibody (Catalog: A2547) was from sigma. DAPI, Alexa Fluor@488 donkey-anti goat antibody (Catalog: A-11055) and Alexa Fluor@594 goat-anti mouse antibody (Catalog: A-11005) were from Invitrogen (Paisley, UK).
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4

Androgen Receptor Immunoprecipitation

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Muscle and spinal cord were homogenized in RIPA buffer containing complete protease inhibitor cocktail (Roche) using a motor homogenizer (TH115, OMNI). Lysates were incubated on a rotator at 4°C for 1 hour and then pre-cleared by centrifugation at 13,000 g for 10 min at 4°C. Protein concentration was determined by BCA protein assay (Pierce). Protein lysates (500 μg) were incubated with AR antibody (Millipore, PG-21) or rabbit IgG (Santa Cruz) overnight at 4°C, then with protein A beads (Santa Cruz) for 1 hour at 4°C. Beads were washed and the eluate was resolved by 7.5% SDS-PAGE and then transferred to nitrocellulose membranes (Bio-Rad). Blots were probed with AR antibody (Santa Cruz) and proteins were visualized by chemiluminescence (Thermo Scientific).
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5

Cell Line Characterization and Validation

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RWPE-1, LNCaP, PC-3, and 22RV1 cell lines were purchased from China Center for Type Culture Collection. CX43 and AR antibody were purchased from SANTA CRUZ. CX43siRNA and negative control were purchased from GenePharma. Lipofectamine RNAiMAX Reagent and Opti-MEM Reduced Serum Medium were purchased from Invitrogen. Cell Counting Kit-8 (CCK-8) was purchased from DOJINDO. ASC-J9 was purchased from AdooQ BioScience. Charcoal stripped fetal bovine serum and fetal bovine serum were purchased from Invitrogen. Keratinocyte-SFM were purchased from Gibco.
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6

AR-KDM4A/B Interaction Analysis

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Total protein was extracted from MFE-296 cells. After protein quantification, 500 μg of each cell lysate was added to 10 μl of AR or KDM4B antibody, shaken at 4°C overnight, and then added to 30 μl of Protein A + G Agarose (Beyotime Institute of Biotechnology, Haimen, Jiangsu, China), shaken at 4°C for 4 h, centrifuged at 2500 × g for 5 min, and washed with a RIPA kit (Beyotime) to collect the immunoprecipitate-bound agarose beads. Each immunoprecipitate was denatured with 20 μl of 1× SDS-PAGE loading buffer at 100°C for 5 min. Each supernatant was subjected to SDS-PAGE (8% acrylamide). Other steps were as described in the Western blotting section.
To determine whether KDM4A or KDM4B can interact with AR in AN3CA cells, AN3CA cells grown in DMEM/F12 media containing 10% fetal calf serum were transfected with 1 mg of PWP1/GFP/Neo-AR or 1 mg of its negative control PWP1/GFP/Neo after 72 h using Lipofectamine2000 according to the manufacturer's protocol. Cells were harvested and subjected to immunoprecipitation using AR antibody (Santa Cruz), followed by Western blotting with KDM4B antibody (Bethyl Laboratories) and KDM4A antibody.
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7

Comprehensive Antibody Panel for Protein Expression

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Antibodies to HER2, HER3, AKT1, phospho-AKT1 (S473) and PARP1 were purchased from Cell Signaling (Danvers, MA, United States). Antibodies to cytokeratin-18, phosphor HER3, Ki-67 and GADPH were purchased from Abcam (San Francisco, CA, United States). Anti-pAKT (S473) for IHC staining was from GeneTex (Hsinchu, Taiwan). AR antibody was from Santa Cruz Biotechnology (Dallas, TX, United States). Antibodies to phoso-HER2 and cleaved caspase 3 came from Merck Millipore (Taipei, Taiwan).
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8

AR Subcellular Localization Determination

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ChIP assays were performed with AR antibody (Santa Cruz) as we described [23 (link)]. To determine AR subcellular localization, LNCaP cells stably expressing GFP-tagged AR were used. Cells were counterstained by DAPI and images were captured by using a Zeiss LSM780 confocal microscope (Carl Zeiss Instruments) as we reported [28 (link)]. AR subcellular localization was also confirmed by Western blotting nuclear and cytoplasmic extracts from cells transfected with Flag-tagged AR, AR mutants and the AR-V7 splice variant.
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9

Western Blot Analysis of Androgen Receptor

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Western blot analysis was performed as described previously 31 , 34 (link), 35 (link). Briefly, LNCaP cells in phenol red-free media/ charcoal-stripped serum at 60-70% confluency were treated with compounds for 24 h, after which cell lysates were obtained using RIPA buffer (ThermoFisher Scientific, Waltham, MA, USA). Equal amounts of protein were resolved in 10% SDS-PAGE gel and transferred to a PVDF membrane. The membranes were probed with AR antibody (1:500) (Santa Cruz Biotechnology, Dallas, TX, USA). β-actin was used as a loading control. Signals were visualized using the SuperSignal West Dura chemiluminescence kit (ThermoFisher Scientific, Waltham, MA, USA) and imaged on a Chemidoc gel imager (Bio-Rad, Hercules, CA, USA). Images were quantified using the Image J software (NIH, Bethesda, MD, USA). Effective dose (ED50) values were calculated using the linear interpolation method in MS Excel software.
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10

Immunohistochemical Analysis of AR in Skeletal Muscle

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AR113Q skeletal muscle was frozen in isopentane pre-chilled by liquid nitrogen, sectioned at 5 μm with a cryostat and stained with H&E. For immunofluorescence, frozen sections were stained with an AR antibody (Santa Cruz) and a secondary antibody conjugated to Alexa Fluor 594 (Invitrogen). Confocal images were captured with a Zeiss LSM 510 microscope and a water immersion lens (×63).
BAC fxAR121 muscle was fixed with 10% neutral buffered formalin, embedded in paraffin and sectioned at 4 μm. Antigen retrieval was performed by boiling in Thermo Citrate buffer, pH 6.0 (Thermo Scientific, IL) for 20 min. Slides were blocked by donkey serum (Jackson immunoresearch lab, PA) for 30 min. The primary antibody (AR: sc-816-Santa Cruz, TX; Laminin: ab11575-Abcam, MA) was applied and incubated at RT for one hour. After three washed in TBS, slides were incubated with donkey anti-rabbit HRP (Jackson immunoresearch Lab, PA) at 1:200 for 30 min, then developed with DAB and counterstained with hematoxylin (Surgipath, IL), dehydrated and mounted.
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