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Pentafluorophenol

Manufactured by Thermo Fisher Scientific
Sourced in Germany

Pentafluorophenol is a chemical compound used in various laboratory applications. It is a colorless crystalline solid with a melting point of approximately 156°C. Pentafluorophenol is commonly used as a reagent in organic synthesis and analytical chemistry.

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4 protocols using pentafluorophenol

1

Solid-Phase Peptide Synthesis Protocol

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All Fmoc amino acids, Rink amide AM 200–400, 1-hydroxybenzotriazole (HOBt·H2O) and O-Benzotriazole-N,N,N’,N’-tetramethyluronium hexafluorophosphate (HBTU) were purchased and used as received from Iris Biotech GmbH (Marktredwitz, Germany). Triisopropylsilane (TIS), ethane-1,2-dithiol (EDT), trifluoroacetic acid (TFA), sodium trifluoroacetate (NaTFA), acryloyl chloride (99 %), diisopropylethylamine (DIEA, 98 %), dicyclohexylcarbodiimide (DCC, 99 %) cesium hydroxide monohydrate (99.95 %), ethyl vinyl ether (98 %), palladium on activated charcoal (10 % Pd), phosphate buffered saline sachets and α-cyanohydroxycinnamic acid were purchased from Sigma-Aldrich (Buchs, Switzerland). N,N-dimethylformamide was obtained from VWR, (Nyon, Switzerland) and N-methylpyrrolidone was obtained from Schweizerhall (Basel, Switzerland). Glycidol (96 %), ethanolamine (99 %), serinol (98 %), p-methoxybenzylalcohol (98 %), phosphorus tribromide (1.0 M solution in dichloromethane, AcroSeal®), potassium carbonate (99+ %), maleic anhydride (99 %), β-alanine (99 %), pentafluorophenol (99 %) and benzene (99 %) were obtained from Acros (Germany).
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2

Synthesis and Characterization of Glyco-Nanoparticles

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All chemicals were used as supplied unless otherwise stated. Acetone, dichloromethane, toluene, methanol, diethyl ether were purchased from Fischer Scientific at laboratory grade. Dodecane thiol (≥98%), potassium phosphate tribasic (≥98%), carbon disulfide (99%), N-hydroxethyl acrylamide (97%), 4,4′-azobis(4-cyanovaleric acid) (98%), mesitylene (reagent grade), N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (≥98%) were all purchased from Sigma-Aldrich. 2-Bromo-2-methylpropionic acid (98%), 4-(dimethylamino)pyridine (99%), pentafluorophenol (99%), triethylamine (99%) were purchased from Acros. Microtitre plates were purchased from Greiner Bio-one. 10 mmol HEPES buffer containing 0.05 M NaCl, 0.1 mM CaCl2 and 0.01 mM MnCl2 (pH 7.5, HEPES) was prepared in 200 mL of milliQ water (with a resistance > 19 mOhms). 60 nm gold nanoparticles were obtained from BBI solutions. Concanavalin A and soybean agglutinin and Ricinus communis agglutinin-120 were purchased from Vector Labs.
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3

Purification of Organic Solvents and Reagents

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Toluene and dichloromethane (DCM) were distilled under normal pressure over calcium hydride under nitrogen before use. Tetrahydrofuran (THF) was distilled under normal pressure from sodium benzophenone ketyl under nitrogen immediately prior to use. Triethylamine (Et3N) was distilled and dried over potassium hydroxide. Other solvents, including N,N-dimethyl- formamide (DMF), chloroform (CHCl3), methanol, ethyl acetate, hexane and petroleum ether (PE, b. p. 60–90 °C) were purchased from Sinopharm Co. Ltd (Hangzhou, China). They were of analytical grade and directly used as received without further purification. WCl6, Ph4Sn, CuI, PPh3 and [PdCl2⋅(PPh3)2] were bought from Aldrich (Shanghai, China). N,N′-dicyclohexylcarbodiimide (DCC), p-toluene sulfonic acid monohydrate (TsOH), 4-(dimethylamino)pyridine (DMAP), phenylacetylene, pyrene-methylamine, and pentafluorophenol were purchased from Acros (Shanghai, Chnia). Methyl 6-(4-iodo-phenoxy)hexanoate was obtained accroding to the procedures reported elsewhere [37 (link)].
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4

Synthesis and Characterization of Glyco-Nanoparticles

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All chemicals were used as supplied unless otherwise stated. Acetone, dichloromethane, toluene, methanol, diethyl ether were purchased from Fischer Scientific at laboratory grade. Dodecane thiol (≥98%), potassium phosphate tribasic (≥98%), carbon disulfide (99%), N-hydroxethyl acrylamide (97%), 4,4′-azobis(4-cyanovaleric acid) (98%), mesitylene (reagent grade), N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (≥98%) were all purchased from Sigma-Aldrich. 2-Bromo-2-methylpropionic acid (98%), 4-(dimethylamino)pyridine (99%), pentafluorophenol (99%), triethylamine (99%) were purchased from Acros. Microtitre plates were purchased from Greiner Bio-one. 10 mmol HEPES buffer containing 0.05 M NaCl, 0.1 mM CaCl2 and 0.01 mM MnCl2 (pH 7.5, HEPES) was prepared in 200 mL of milliQ water (with a resistance > 19 mOhms). 60 nm gold nanoparticles were obtained from BBI solutions. Concanavalin A and soybean agglutinin and Ricinus communis agglutinin-120 were purchased from Vector Labs.
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