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2 protocols using chir 99021 chir

1

Colon Cancer Pathway Regulation Protocol

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All reagents and chemicals were purchased from Sigma-Aldrich unless otherwise stated. AOM (A5486; Sigma-Aldrich, DSS; molecular mass 40–50 kDa) was purchased from Affymetrix (Santa Clara, CA). Complete protease inhibitor cocktail and phosphate stop were purchased from Roche (Basel, Switzerland). CHIR 99021(CHIR) was purchased from Selleckchem (Houston, TX).
The antibodies used in this study were anti-β-catenin (#8480, clone D10A8; Cell Signaling Technology), anti-Non-Phospho-β-catenin (#19807, clone D2U8Y; Cell Signaling Technology), anti-Cyclin D1 (#2978, clone 92G2; Cell Signaling Technology), anti-C-Jun (#9165, clone 60A8; Cell Signaling Technology), anti-CD44 (#3570; Cell Signaling Technology), anti-MMP7 (#3801, clone D4H5; Cell Signaling Technology), anti-Survivin (#2808, clone 71G4B7; Cell Signaling Technology), anti-ATG7 (#MAB6608, clone 683906; R&D Systems), anti-β-actin (#MAB1501; Novus Biologicals, Littleton, CO), anti-HPRT (#ab16048; Abcam), anti-Rac1 (#05-389, clone 23A8; Millipore, Burlington, MA), and anti-lamin B (#ab16048; Abcam).
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2

Isolation and Culture of Intestinal Organoids

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Small intestines of 7–10 weeks old Cd44fl/fl;VillinCreERT2 mice were washed with PBS and opened longitudinally. Intestines were placed villi facing up. Villi were gently removed using a glass slide and the intestines were washed in PBS until no cell debris remained. The washed intestines were incubated with 2 mM EDTA for 30 min at 4 °C. Crypts were mechanically released from the surrounding tissue by shaking. The freed crypts were pelleted and passed through a 70 μm strainer. Isolated crypts were resuspended in Matrigel (Corning) and cultured in 500 μl complete IntestiCult™ Organoid Growth Medium (STEMCELL Technologies) based on the previously described standard ENR medium (Adv. DMEM F12 (Sigma), 50 ng/ml EGF (Peprotech), 100 ng/ml Noggin (Peprotech), 3 µm CHIR99021 (CHIR) (Selleckchem), B27 (Gibco), N2 (Gibco), 1 mM N-Acetyl cysteine (Sigma)) [16 (link)] in 24-well plates. 4-hydroxytamoxifen (4-OHT) (1 mM) (Sigma) or ethanol was added for 48 hours. Organoids were split by a mechanical breakup and dispersed crypts were reseeded every fifth day in a 1:2 ratio for 2 passages. Organoids were treated with CHIR (15 µM) or DMSO in IntestiCult™ Organoid Growth Medium (STEMCELL Technologies) or in ENR supplemented with 50% Wnt3a CM and 20% R-Spondin CM or 5% R-Spondin CM only.
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