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3 protocols using sin3a

1

Transcriptional Regulation of Cell Lines

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HepG2, HuH7, T47D, and MCF-7 cells were purchased from the American Type Culture Collection (ATCC, Manassas, VA) and were not further tested or authenticated by the authors. The cell lines were maintained at 37°C in the presence of 5% CO2 in DMEM or RPMI medium supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin solution (Sigma Aldrich, St Louis). The cells (2.5 × 104 per well) were seeded, and the FBS content of the medium was reduced to 5%. Antibodies against β-actin, AHR, RNA Pol II and ER-α were purchased from Santa Cruz Biotechnology (Santa Cruz, CA); NR2E3 was obtained from Aviva Systems Biology (San Diego, CA); Sin3A and LSD1 were purchased from Cell Signaling (Danvers, MA); H4Ac and H3K4me2 were procured from Active Motif, Carlsbad, CA). Benzo[a]pyrene (BaP) was dissolved in DMSO, and the stock solutions were directly added to the culture media. Control cells were treated with DMSO only.
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2

Protein Analysis in Cell Signaling

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PAK4 (Cell Signaling Technology, USA); PAK4 (Santa cruz); Phospho-PAK4 (Ser474,Cell Signaling Technology, USA); RUNX1 (Abcam, USA), RUNX1 (Santa cruz), SIN3A (Cell Signaling Technology, USA); HDAC1 (Cell Signaling Technology, USA); PRMT1 (Cell Signaling Technology, USA); Mono-Methyl Arginine (R*GG) (Cell Signaling Technology, USA); Jagged-1 (Cell Signaling Technology, USA); PTHrP (Abcam, USA); Flag, GFP, GAPDH (GenScript, Nanjing, China).
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3

Comprehensive Antibody and Growth Factor Panel

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The source of antibodies used in the study were as follows: AbCam H3K9ac (ab4441), H3K27Ac (ab4729). Cell Signaling Technologies AKT (9272), p-AKT (4056, 4058), CTBP1 (8684), ERK (9102), p-ERK (9101), FGFR4 (8562), GAPDH (2118), H3K4me3 (9751), H3K4me2 (9725), H3K36me3 (4909), H3K9me2/3 (5327), HA-tag (3724), HDAC1 (5356), HDAC2 (57156), Histone H3 (14269), JUN (9165), LSD1 (2139), MEK (4694), p-MEK (9154), pan-RAS (3965), RBBP7 (9067), RCOR1 (14567), SIN3A (8056), Stretavidin-HRP (3999). All CST antibodies were used at 1:1000 in 5% milk/PBST buffer. Santa Cruz c-MYC (sc-4084), HRAS (sc-34), KRAS (sc-30), NRAS (sc-519), TUBULIN (sc-69969). Santa Cruz antibodies were used at 1:500 except for TUBULIN at 1:3000. Sigma Aldrich FLAG-M2 (F1804, 1:1000), FGFR4 (HPA-028251, 1:500), RREB1 (HPA-001756, 1:500). The source of growth factors and mitogens were as follows: Cell Signaling Technologies EGF (8916), FGF1 (5234), FGF2 (61972), TGF-beta (8915), TNF-alpha (8902). Origene FGF8 (TP723101). Prospec HGF (cyt-244), FGF16 (cyt-939). Mek2 was a gift from Dustin Maly (Addgene plasmid # 40776; http://n2t.net/addgene:40776; RRID:Addgene_40776).
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